HsaINT0146229 @ hg38
Intron Retention
Gene
ENSG00000146197 | SCUBE3
Description
signal peptide, CUB domain and EGF like domain containing 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr6:35246206-35253079:+
Coord C1 exon
chr6:35246206-35246285
Coord A exon
chr6:35246286-35248555
Coord C2 exon
chr6:35248556-35253079
Length
2270 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CTCCCTGCCATCCTTTGCAGGAC
3' ss Score
11.8
Exon sequences
Seq C1 exon
AGGACTATGAGCAGCTGGTAGAAGACATTGTGCGAGATGGCCGGCTCTATGCCTCTGAAAACCACCAGGAGATTTTAAAG
Seq A exon
GTGAATGAATATTAACAATAATGATAGCTAACATTTAATAAGCATGTAACAATATATAGGCAATAGGCTAAGTGCTTACATGAATATTCTCACTTGATAGACACAATAGCTCTATGAGGTAGGTGCTTTCTCCATTGCTTCTTTACAGATGGGAAAACTGGGGTATAGAGAGTTAAAGAACCTGCCCCATGGGAAGCTGGGATTTGAGCCCAAGCCTATCCGACTGCAGCGTCACCCACACTATATTACACCTTGGGGAAAACTTGGAAGAGAAAGGGAAAGTGAGGAGAAGAAATGTCCCTACCTCTTCCAAGAGACATAGGGAAAGTGAAGTATAGAAAGATACTTTTGCATAAGTCCCTTCCTTCCCCTATTCTCTCCCCAGGCCTCATTAAGCAGCAGCAGATAGGCTGCGTGTGGTGGTTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCTCGTCTTAATTTTGTAAAAATACAAAATTATCCGGGTGCGGTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTCAGGAGGCGCAGGTTGCAGTGAGCCGAGATGGCGCCATCGCACTCCAGCCTGGGTGACAAGAGTGAACCCTGTCTCAAAAAAACAAAAACAAAAAAAGCAGCGGCAGATCTAGCACAGCTTTCTCAGAATCAATTTATGTACAGACTTCTTTTCAAGGAAAATAAATACTTCCAACATGGAAGAATGGACTAGATGCCCTGGGTCGGTGAATCCCAATTTAAGAAAATCTTCCTTAAGAAACTATAGTCTGGCTGCGCATGGTGGATCATGCCTGTAATCCCAGCACTTTGGGGGGCTGAGGCGGGTGGATCGCCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATAGTGAAACCCCGTCTTTACTAAAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGCGCCTGCAATCCCAGCTACTCGGGACCCTGAGGCAGGAGAATTGCTTGGACCGGGGAGGCAGAGGTTGCAGTGAGCTGATATCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTTAGACTCAGTCTCAAAAAAAAAAAAAAAAGGAAACTATAGTCGTAGTCATAGAATTATCCTTCATAAATTATCACTGCAAAAAAGTTAAGTGTTAGCAAAATATTTTTATATTATCATCAAAATAAAAGCCTTGACAACAAAAATCACCTAGAACTTGCAGACTTCAAAGAATATACTTTTAATAATACTTTTCAAACATTTTTAAAGCATCTGAACCCTTATTTCAAATCAAATGTACTGTGGAATTCCAACACATAAAGCAGTGCAGCTGTTCTGATTAAAGTGGGGTAAGAGGCTGAAACCCCTACTTCTTATTTGAAAAATCCACTGACGCCATGGAAGGAGCACCAGCCTAGGAGCCAGAAGACCTGAGTTTTAATGCACAGTGCCTGGCACCTAGTAGGCTCTCCACATACCATGCTACTGTTGTAGACAGGGTGGTCAGGAAAGGCCTCTAAGGAGAAGAGACCCAAATGAGGTAAAAGGGCTCCCCATTAGAAGATGAGGGAGGAGCATTCCAAGCTAAGGAGCATGGGAGCAATTTAGTGTGTTCAGGAACCTCCAGAAGGCCAGTGTGGCTCAGCAGAGGGAGCAAGAGTGGAGGTGGAAAGCAAGATACAGATCACATTCTGCCAATGAGTGATAAAAGAAACCAGAGAAGAGTTTCAAACAGGAAAAAGATGAACTAATTAAAAACACAAAAAGTCACTCTGGCTGCTGTGGGGAGAAGAGTCTACGGAGGGACAAAGGTAGCATGGAGACCAGTTAGGAGGCTACTACAGTACTCCAAGTCAGAGACAGTGGTGGCTTGGGAAGATGATAAGTGGTCAGACCCAGACATATTTTGAAGGTAGAGTCAATAGGATTTGCTATACTTGTAAGCAAGAAAGAGGATTCAAGGATGGCTCCAAGGATTGGGGCCTAAGCAACAGAAGGATGGAGCTGCCACTGATTCAGTTGTGGAATTCCAGAATAAGGGCAGATGGTGGGAATGGGAATCCAGAGTTGCCCTCTGGATATATTCAGTATAGGATGCCTAGTAGACATCAAGAAGGGCTGCTGAGTCATGGTGTTTCTCTTTCCCACCCCCGACGGTGAGGCTGACATTGCTCCCTGCCATCCTTTGCAG
Seq C2 exon
GACAAGAAGCTCATCAAGGCCTTCTTTGAGGTGCTAGCCCACCCCCAGAACTACTTCAAGTACACAGAGAAACACAAGGAGATGCTGCCAAAATCCTTCATCAAGCTGCTCCGCTCCAAAGTTTCCAGCTTCCTGAGGCCCTACAAATAGTAACCCTAGGCTCAGAGACCCAATTTTTTAAGCCCCCAGACTCCTTAGCCCTCAGAGCCGGCAGCCCCCTACCCTCAGACAAGGAACTCTCTCCTCTCTTTTTGGAGGGAAAAAAAAAATATCACTACACAAACCAGGCACTCTCCCTTTCTGTCTTTCTAGTTTCCTTTCCTTGTCTCTCTCTGCCTGCCTCTCTACTGTTCCCCCTTTTCTAACACACTACCTAGAAAAGCCATTCAGTACTGGCTCTAGTCCCCGTGAGATGTAAAGAAACAGTACAGCCCCTTCCACTGCCCATTTTACCAGCTCACATTCCCGACCCCATCAGCTTGGAAGGGTGCTAGAGGCCCATCAAGGAAGTGGGTCTGGTGGGAAACGGGGAGGGGAAAGAAGGGCTTCTGCCATTATAGGGTTGTGCCTTGCTAGTCAGGGGCCAAAATGTCCCCTGGCTCTGCTCCCTAGGGTGATTCTAACAGCCCAGGGTCCTGCCAAAGAAGCCTTTGATTTACAGGCTTAATGCCAGCACCAGTCCTCTGGGGCACATGGTTTGAGCTCTGGACTTCCCACATGGCCAGCTTTCTTGTCTATACAGATCCTCTCTTTCTTTCCCTACGTCTGCCTGGGGTCTACTCCATAAGGGTTTACAAATGGCCCACAACACTGAGTTAGTGGACACCGGCTAAATGAGGAAGAGCAGCAGGCATTGTCATGGTGAATGCCCCGCTGTAGCTCCCTGAGAGAAAGACTGTAACTCTGCAGGACAGAAACAAGGTTTTAAAGCATTGCCAAAAAAAAGAAAACAGAAAGAAAAAATGTATCATCTAAAGGACTAGACACAGAACAATTGGAAGTCAACTTCAAACACTAATCCCTTTTCTTGTCTTCCCTGGCCCAGCCACCTCCTCAGCCCCATGTGATGCTCCCTGGGGGAGCCCTACTCCCCTTGCTACATGTTGTCCTTAAACATGGTTATTGACCTGAAGCCAGCCTAGGCCTTGCCCTACAGTTGTTTTTCCCTTGTAGCCCCAGCTGGCTTGTGGGCTTCACCAAAGAGGACCCCACTCTGAAGCCAGCCTGGAGCCACCTACCTCTGGCCTCAGGCTGTGGGCAGCAAAAGGAATGTGTGTGCACTTGGCGAGCCTCCTGCCCACCCTGTCCACACCTAATAAGTGCAATCATTTTGAGTCTTTCTATGTTGTCTAGACGGAGGGGTTTTTGTTTTCTGGGTTTGTTTTTTGTTTTTGTTTCTTCTTCCTCTATTAGCAAAACCCTATTTATAGCTGCCCAAGAGAAAAGAGTGTATGTTTGGAGTGGAAGAAAATCGGTTTTGAATCTCATGAACCTTGAGTGCTGGAGCATCTGATCTGTCTCTATGCCACCACTGGCCACCTAGAGCCCTTGGCTGTGGTAATCCAGGGTAATTGCGCAGAGGCATCTGATGTGTAGGAAAGTAATTCTGGGGATTTGATGGAGCAGAAAGGAGAGAGACCTATGTTTGCTAAACCAATCTTGCTATCCCTATGCCTCTCCATGGAGTCAGTGTGGACCTCATGATTATAGAGGCCAATGGAACTGGTCAGTGATTCTCTACCCCAAGTAGGGAAAACCTCCATCTTTTCCCTGTCTTCATCCTGTTATCCCCTGGTGTACACATGGAAGAGGACCAGGACATACCACCTGGGGATGGGCTGACTCAGGGTCCCGAGGCCAGAGACAAAGCTGTGGGAGCCAAGAATAAGACAGAAGGCATCAGATATTTGCCTGGCTCTGGTCACTTCCCTTTGAAGTTGACTTCAAGCTTAGCTTCCTCAACTACTGTTTTTCAGAAGGAAGAAAGAATCAAATGGAAGAAGAATCAAGTCCATGCCCAAGCCCAAAGCCTGCACACATTCTGCCCTTAATCCAAGTGTTGCCTATAAAATTATTTTCTGTTTTCTCACTCTAGTTCCCCCAAAGCTGTAGTCCCAATCAATCAAAGGCTACCAACTGAGTCCTCAGGTTCATTTCTTTTTTTTTTTTTTTTCTTTTTAACTCTCCTGGTAACTCACAGAACAGCTCAGGTTCATTTCTAGGTGACTGTCCTAGGCTACTGCTCCCCCAGGAGACTCAACACTAAATAAAGGAGTCTGACTCCCTGCCCTCCCATCAGTAGCATTCATCAGCCAAAACGGCCATAGCAGTAGGTAGCCAATGACACAGCTAGATTCCCTGACAACCATTAGCCAACATCATGGTCCTTGTGGGTAGAGTGTCTGGCTACCTTTGTCTTTCTGGGTCAAGGAGGGCCACTGTAAAGATGCAAAATGGCTGCTTCCAAACAAGGGAAATGGTCATTTAGTATGAGTGTCTCTGTACTTCCCAGGAAGCACCATGAAAACTGCTTTAATCAACTCTGACTATCCTAATTCTCCACCAGAAGCTAGGATAACTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGTAATGGTGCTATCTCGGCCTACTGCAACCTCCGCCTCCCAGGCTCAAGCAATTCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCGCGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGCCCGGGCTGGTCTTGAACTCTTGACCTCAGGTGATCCACCCGCCTCAGTCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCTAGGATAACTTTCTGATTCCTCTCTGCCAGCCGTTTTGCGTCTCTTGGAAAGCCAAACGGTGACCATGCTTCTTAATTTATGCCTTCAGGGTCTGGCTTCTCCTTTCTCCCTTCCTTTCCTGTCACACCATGCATACATACATACAAATACACATCCTTCAACCATTTATTCCATGGCTTATGAGACCTGCAAATGAGTTCCACAGTACGGAAGGCATAGACCACTAGGCTTCTTAATTGATGTCAAGGCAGATCTTGGTGAGCAGGTAAAAACCTGCTATTGTCCACCAAGTTTAATTTAGGTCCTCCAAGTTGGAGGGTTAAGAACCCAGGCAAAGCTGCTGCTGAATCTATGGAGGAGGCTGGCCCTGGGACATCAAACTAGGGGTTAACTGGATTGAATGAGGAGTCAACGCTCAGGGACATTCTAGGTCTTTACAGGTCAGACAGAAGAGAGGTTTTTACCATTGGAGGGAAATGGAAAGATGGTATAAATAGGATCCCTTCATGAAGCAACCCAGAGGCCTCTCTGCAGCGTGTAGGGTGTGGGGCGACAGTATTGTGGGGCTTCCATTCATCTTAGTACAAAACCTCACCTGCTCTGAGCCTGGAAATGGGAGGGCTTCACGCACCAAGTAATGCACACCAGAAAGGCACTTATATCCTCAGCAACATGGCAGTTCCTCTTTACTTCTCTGCCTCCCTCTTTCTATATTATCAGGCCATGCCTATTCCTACAACCTGAGACAACTCTTGGAGTCAGAAGAAAACTGACCAGATCCTGGATCTGAGCTGCCTGCTCCAGGCCTAGAAATCCCCAAAGGCTGGCACTGAGCTGTGACTGCTTTAACAGCCCCCAAGATTTGGTCAGTTTGAGGTGGTGGAGACTCAGATTTGTTGCTGAAAGTTCAGTAACACAGTCCTGGTCTTTGGCCCTAGAGAAACTTTTTATATGAGAAGTGTTCTCTATATACATGTTTGAGGTGACTCTGGAATGGATTATGAGGTCATATCTCAAAATGTCAGAAAACGTTATAGAGCACTCGAACTTTTGTATTTGCTGCTTAACCTCAATATTACAGCCACAAACAAGGGGTACCAAGACAAAGTATAACTGAGCATAAGCAGAAAATGTTAACCCTCCAGGTTTCTTTCTTAAGCACAATAAAAGTGGGAGCGAACAACACAAGGATATTTTTACATTTGACCCGTCTCAAAAGTAGCACACCCTATCCTTGTGCCATTATTTGTACAAGGAAATATATGATTAGAAGGAATAGAACCCCCAGTTGTCATCAGCTTTTTTAGACACCACAGGTTGTAGCAGTTTGAACAAACTGAAAACTTTATACTTCTGTGTGAGCTGAACTCAAGTTTCAGAATAATCATCGCCATGTGGGAGGCTTTTTGTTAAATGCAGAAGAAATTTCAAAATATTGTATTTATATCTGCCTTCCACTGCTGCCAATTTAGTAAGCATCTCCTATACAATCGACAATAAACAGCAAATGATGCAGTTCATAGAGTATTTTGCACTTGGGGAAAAATATGTATCTGAATTGTAAAAAGAAATGTTTGGATTTTGTATGTCTTTTTTATTATTATTAAAATACTAAATGAAACTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146197:ENST00000274938:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development