GgaINT0141281 @ galGal3
Intron Retention
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3968672-3969254:-
Coord C1 exon
chr26:3969175-3969254
Coord A exon
chr26:3969019-3969174
Coord C2 exon
chr26:3968672-3969018
Length
156 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCAGCTTTGCTTCCTCCCAGGAC
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGGACTACGAGCAGCTGGTGGAGGACATCGTGCGGGACGGCAGGCTGTACGCCTCCGAAAACCACCAGGAGATCCTCAAG
Seq A exon
GTGAGCGCTGCTCCCCATCACCTCCGCTGCCTGGCACTGCTGGGGTGCGCACGGTGCATCGCCCGGGTTTGGAGCTGTGCTGGGGGTGCTGTGGGGCTGAAGCAGCTGCACGCTGCGCCCGGGATTGGGGCTGACATCAGCTTTGCTTCCTCCCAG
Seq C2 exon
GACAAGAAGCTGATCAAAGCGTTCTTCGACGTGCTGGCACACCCCCAGAACTACTTCAAGTACACGGAGAAGCACAAGGAGATGCTGCCCCGCTCCTTCATCAAGCTGCTCCGCTCCAAAGTCTCCAGCTTCCTGCGGCCCTACAAATAGCGCCCTGACACCCCAGGCCGCCCGGCCACCGAGGAAACCCTTCTCCTCCCTCACTTCTTATTTCAGCTTTCCTCCTCCTTCCTGCTCGGCTCCGGCAGGACCGCCACCTCCCACCCTGCAGACAGCTCCGGTCTCACCCTGATCTCACCCAGCGATGCCGTTCCTCTCTTCTGCAGCAGCTTCTTCACCCCATCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGCCTCCGAAAACCAC
R:
GAAGTGAGGGAGGAGAAGGGT
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]