HsaINT0146695 @ hg38
Intron Retention
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136451256-136453510:-
Coord C1 exon
chr9:136453428-136453510
Coord A exon
chr9:136451409-136453427
Coord C2 exon
chr9:136451256-136451408
Length
2019 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
TCTGCATTTCCTTGCGACAGACC
3' ss Score
6.7
Exon sequences
Seq C1 exon
GGATAGTGCCGCAGGAGGCGCCTGTTGGAAACTCACTTTCCGAGCTAAGCGAAGAAAATTTTGATGGAAAATTTGCTAATCTG
Seq A exon
GTACTTTGTCACATTTTCTTAAACTGTTTGTTTTCCATAAAGTTCATCGAGTGGGCACCCAGACTCCTTGTTGAGTTGTAAGATGATGGTAGTGAGGACTATGAAATTGTTTCTAAAATTGTTTCTTAAAGTGAAAGTGCTTCTAAATAGCTTTCATCCTTAAAATATGAAGAGTTGGTGAAAACACTGGCAGGGAAAGATGGGGAAGAGAGAATTCAGTAGTGTAAAAACAGTTACTTTAAGTAGAAGAAATACCCAAATATCATGAAATCCCCTTATTAATTTTAATTCTTCCAAAATGGGTACCTTCTCTGATTTCTACATCTCTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTGAGACAGATTCTTGCTCTGTCGCCCAGGCTTGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAGTTCTGTGCCTCAGCCTCACAAGTAGCTGGGACTACAGGTGTGTGCCACCATGCCCGGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCATGATCTACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGATCCACCAAGCCTGGCCTTTTTTTTTTTTTTTTTTTTTCCCTAAGACATAGTTTCGCTCTGTCGCCTAGGCTGGAATGCAGTGGCGCCATCTTGGCCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCAGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGTGCCACCATGCCTGGCTAATTTTTTGTATTTTTTGGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTAAGGTGTGAACCACTGCACCTGGCCATCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTCTGTCGCCCAGCCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCATCCTCTGCCTCCCAGGTTTAAGCAATTCTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACACCCAGCTCATTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGCTGATCTTGAACTCCTGACCTCATGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCCCGCCCAGCCCGGCCGTCTCTTTTTCTACAGTAGAATTTCTTTTCTAATTTTTTGATCTCACAAGAGGATGTCCTGGAATTCAGTAGAATTTCTAACATTGTCACTGGTTTTCCTGAAAGTGAGATTTATCTCATTAGACATGTTTGGTATAAATACCTCCTCTGTTTGCTCTACTCCTAACCAGGAGGGATGGTTGCTTTTATACAGACCGCATTCTGGAACCTTCTTTACAGATACCCAGCCCTTCACGGGCATCCCATCAGTAGGCGATTGCTATAGTTTGAACTTGCATTAGGTGTTTTACCCTTTAAAATACTGTGTCCCTGGAAAAGTAAAAATGAGGGTTGAGCTATTAAAAATTGGGACTTGACCCAGGAATAAATATTTTTAAAAATCATTGTATCTTTGAGAACACCCATCGCCCCCCTCTGGCCAGTCTTCCCTCAGTGCATGCTCACACTCCGTTTCTTCCAGCCCGGAATCTCCATCGAACGCCCTCATTTGCATTCTGAGTGCTGAGTGCTCCCAGACGGAGCTGCTTATTAAGTGCGGCTGGCTCTTCTCTAGTCAGGCCAGGTAGAGGCTCTGGGAGGCCCAGTCAGGGGGCTGCTCTCCCCAGCCCCCTTCCTGCCTCCCTCTGGTCACCAGAGTCATCCGGCCTCTCAGTGATGTATTTAGGAAACACGCCTGGGGAATTGCATCCCCCTCTCTCTTTCGGTTCCTGTGAGGAGCCCCAGGAGAGCCTGTTCTGCATTTCCTTGCGACAG
Seq C2 exon
ACCCCCTCGAGGACGGTGCCAGACTCGGAGGCCCCCCCAGGGTGGGATCGTGCCGACTCGGGTCCCACGCAGCCACCTCTGTCTCTCTCACCCGCTCCCGAAACAAAGAGACCCGGACAGGCAGCCAAGAAAGAAACGAAGGAACCTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396:ENST00000371706:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development