BtaINT0130192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103945407-103946291:-
Coord C1 exon
chr11:103946209-103946291
Coord A exon
chr11:103945539-103946208
Coord C2 exon
chr11:103945407-103945538
Length
670 bp
Sequences
Splice sites
5' ss Seq
ACGGTATTT
5' ss Score
5.46
3' ss Seq
GCTCGCGTGTGTCCCCCCAGGGC
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGGTGGTGCCGCAGGAGACACCCGGCAGAAGCTCGCGCTCGGAGCCGGGAGAGGAGGAGTTTGGTGGGAACTTCGCTGATACG
Seq A exon
GTATTTGCCCATATGGTTTTTGTCTTTAAGCTGTTTGTTTTCTGTAAACTCCAGTGAATAAGTACTTCTTCTTTCTTAAACTGTAAGTAGGTCAACAGCACTTAAATTTATGAGGTTGTCTTTTGAGTTAATTTCATAAAGAGAAACCTTGAATCCTTAAAACATGAAGAACTGTTGTAAACATTAATAGGGAGAGAAGTAACGGTATAAAAGAAGGCTTTTAAGGAGGAGAAATACGTGTGTATAATGAAACTGTCTTGTCAGTTTTAAGCCTTCTGAAATGGAGAACTTCTCTGATTTCTGCATCTTTTCTAGGATCTGTAAAACTGTTAGTGCTTTCCTTGAAGTTAGGATTCATCGTATCAGACGTGTTTGACATAAACACACACTCCGTCTGTGTGCTGTGATTCCAGGGGCAGGGGTGGGAGGGCGGGTGGATCAACGCTTTTCTATCCGTGTTCTGGAAGCTTCTTACAGATAGCCAATTCTTTTTGCTGTCCTGGGAAACGCTCCTTGTGCGCTTTCCCATTAAAACATTCTGTCCCTGAGAAAATAAAAGTGGCAGTTTAACTGTATTGAAAAAACTGTCTCAACCTGGGGATGACCATCTTTCTGAACAGTTCTGCCTCTCAAACCGCCCCATCCTCAGTGCTCGCGTGTGTCCCCCCAG
Seq C2 exon
GGCTCCTTCAGGACCTCACCAAGTCCCGACACGCCGCCTCAGGCCCTGCAGCTGCCTGCGCCGCTGACGCCCGCACCCGAAGCGCAGAGACCTGTCCAGGCCGCCAAGAAGGAGAGCAAGGAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933:ENSBTAT00000042743:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACACCCGGCAGAAG
R:
CTTCTTCGGCTCCTTGCTCTC
Band lengths:
203-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development