HsaINT0148391 @ hg38
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr13:49483464-49485723:+
Coord C1 exon
chr13:49483464-49483563
Coord A exon
chr13:49483564-49485629
Coord C2 exon
chr13:49485630-49485723
Length
2066 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
ATCTTCCTTGTTTTTTTAAGGAA
3' ss Score
9.69
Exon sequences
Seq C1 exon
GGAAACGAAATATGATAATATTTCAAGAATTCAATATCATTCAGTTATTAGAGATCCTGAATCCAAGACAGCCATTTTTCAACACAATGGGAAAAAAATG
Seq A exon
GTAAAAAATGCAAAATGTAGTTGGGACCCTTCTTTTCTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGCAGAGTCTCACTCTGTCACCCAGGCTGGAGTGTGGTGGCACAGTCACAGCTCACTGCAGCCACAATCTCCTGGGCTCGAGTATCCTCCTCCCTCAGCCTCCCGAATGGCTGGGACTACAGGTGCACACCACCATGCCCAGCTCTTATTTAGTAGAGATGGGGTCTCACTATATTGCCCAGGCTGGTCTCCAACTCCTGAGCTCTAGCAGCTGTTGTGCCTCAGCCTCCCAAAGTTCTGGGATTATAGGCATGAGCCACCGCACCCAGCTGCTGGGGCCCTTCTGAGATGTAAACTATTGCCTTCCTATCCTTTACTTAGCTCAAAATGTTTGTGTTACTTTATAGTGTGTAGAATTTCTTTTATTGTTTTGGAATGGTGGACGGTGGAAATGCTAGGACCATGTTCTGTTTACTTAGTATCATCCACGGCAGTTGACATGTTTCCAGCTTGGCTGTATGAGGAGAATGCTGGTCATGATCTGACAGTGTGCTCCACTGAGACCGAGAGGTATCCCATTCTGAGAGTTTGTGGGAGAAGCTAAAGTCTTCAGGAGTTAATAGTGATATATAAGAAAAGGGACAAAGTAATTTAGGTGAAGGAGAACAAGGTTTTTGTTTTTTGTTTTGTTTTGTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCAGCTTATTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCCCCTGCTTCAGCCTCATGAGTAGCTGGGATTACAGGTGCCTGCCACCATGCCCAGCTACTTTTTTGTATTTTTAGTAGAGACGGGGTTTCATGATGTTGGCCAGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACTTTGGCCTCCCGAAGTGCTGGGATTAGAGGCGTGAGCCACTGCGCCTGGCTGAAGGTTTTAAGATGTATGAGAAAGAAGAGATGCAATTTTATGAAAGAATCATCCAGAAAACAGTATTTTATGTGGTAGCCTCTGAGGGTACCCTTTGCATTGTGAACTAAAGATTAGTCAGAGACTGAAACGTAGAAGCAGAGAAAGAGAAAAGAGAACAAAGAGAGACATAATGGTAGCTTACTTTAGGGCTTGTTGATGAAGAGTAAAAACTCTGCTTTAGGTGTTATGCAAATATTTGCCCTCTGCCTGGTAATGGTACAGTAGCTACCTCCTTAAGGTCAGAGAATTATGAAAAGATTGGCCATGGTGTCACACAGACCCAGGTGTAACCTCCAGCTCTGCTGCGTGCTAGCTGGGTGGTATCTCCATACATACATTTCTTTTATCTGTAAAAAGGTAATAGTATATGTTTCAGAATTATGAGGATTAAATGAGATAAGCATCAGCAACTTGCTTAGCATCCAACTAAGTGCTCAATACATGTTGACCATTCACATGCTGAGAACTTTCATAGTAATAATATGGTCAATGTGTATTGAATACTTAGTTGGTTGCCAAGCATTGTGCTGAGTATATACGCCTCTTTTAAAGTTATCATTACTACTTAAAGTGACTGCAGTGTCTACAATGTGTAAGCATTATCACATTCGTTAACCTTTCTTTGAAGTAGAAACTAGCCAATGAGTGTTTTTCATCTTTACACAACTTACAGTTGAAGGCAAATTTATAATCTAGTAATAACACTTTCTAAGTACTGAGATGATTAGAATTGGGGGATACAGACAGGGATGCATTAAGATTTTAATTCCCAAAGAATTTCTTGACAGTCTTTATAGCTGTGGCTTAATAAAGCACCTAGAAGTAGAACAGAGTCAAAGGGGATGACACTTGTTGACTCCATTAGTCTAAAGACTCCTTATGATATCAGCTTTGAGGCTTTTCAAAACGAATCTAGTACATATAGCCTATGATGATTGACACTTGATGAAAGAGGCCTAACTGCTAAATACTTTTGCCTGACCTGGAAAGTAAAGACATCTTCCTTGTTTTTTTAAG
Seq C2 exon
GAATTTGTTTCCTCGGAGTCTGTCACTCCAGAAGATAATGATGGATTTAAACCACCCCGAGAGCATCTGAACTCTAAAACCAAGGGAGCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169:ENST00000354234:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.927
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(20.1=100)
A:
NA
C2:
PF0085623=SET=PD(20.7=61.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains