BtaINT0131680 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19138921-19140472:+
Coord C1 exon
chr12:19138921-19139020
Coord A exon
chr12:19139021-19140378
Coord C2 exon
chr12:19140379-19140472
Length
1358 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
CTTCCTTGTTTTCTTTTAAGGGA
3' ss Score
10.63
Exon sequences
Seq C1 exon
AGGAATGAAATATAACAGCATTTCAAGAATTCGATATCATTCTGTCATAAGAAGTCCTAAAACCAAGACCGTCATTATTCAACACAATGGGAAAAATATG
Seq A exon
GTAAAAACTGTAAAACATAGATGGTGCCCTTCTGAGAACATTACTACTTAATTCAAATTGTTTGTGTTAGTTAATGATGTGTAGGATTTCTTTTATTATTTTGTAATGTGGTGCTGTTGAAGTGTTAGGACTATATTTTTTAATGACTTTGTATCCTAAGTAACGGTTGGCATGTTCCCAACTTAGATACAGAAGGAGAATGTTGATCATGATCTGACAGTGTATTCTACTGAGACTTAGAGCTATACAGTGTAAGAATTCATGGAAGAAGCTAAAGTGATAGTGTTACATAAGAAAGAAGGATGGAGTAATTTAGGTTGAGATATGGTTGTGAGATGTAGGAGAAAGAACAGAAGCAGTCTAATGAGAGAGTCATCCAGAAAGCAGCACTTTACATGATAGCTTGTGAAGATACACTTTGCAGTCTGTCCTGAGAAGAATAGCTAGTCAGAGACTATAACTTAAGAGAATGATGCAAGAAACAGAACAGGCAGACAAAATGGTAGTTCATGGCTTGTTGGTGAAAAAAAAATTCTAACGTAGGTGGTACACAAATACTTGCCCTCTGCCTAGTAACATACAGAAGATAACTCCTTAATACCACATCATTATGCGAAGATTGGGCCAGGAGATCACATAGACCTGGTTTGCCCTCCAACACTGCACCTTAACTAGCTGGTTAACGTCTTCTGTCTACAATTCTTTTTCTGAAAAATTAGAATAATAATTTCTATGTCAGAATTAAGAGGGTTAAATGAGATAATGTCAGAAACGTAGTGTAGCACAATGCTTGACACCCAGCTAAGTGCTCAACACATGTTGAACGTTGAAGTCCATGGAAAAGAATAATAATGGTCAAATGTGTTCCGTGCCAAGCATTGTGCTAAACCTAATACCCCTTTTTGAAAGTTATCATTACCATATAAAGTGATTGCAGTGTCCTCAACTCATGGAGATAGGCAGCTCCTTTAGCCTTTTCTTTCAAGTAACTACCCAAAGAGTGTTTTTAATCTTTGCACATCTTATAGTGGAAGCCAAATTTATCATCTGGTATCAGAATTGAGGTATACCGACGGATATATTTGTATTTTATTTTGAATTTATAATGCCTCAAGAATGTCTTGACAGTCCTTATAATTGTCGTAGCTGTGGCTCATGAAAGTGCCTGGGAGTAGAACACAGCTAAAAGGGCTCCATCCTGTCAGAGATTCCTCAGGGTATCAGCTTTGAGTCTTTGAAAACTAATCTAATTGCTGCAGCCTATGAAGATTGATACTTGATGAAAGAGGCCTTACTGCTAACTTAAATTCTTTTTCCTAACCTAGAAAGTAAAGACATCTTCCTTGTTTTCTTTTAAG
Seq C2 exon
GGATTTACTTCCTCAGAGTCTGTCACCTCAGAAGATAATGGGGAACTTAATCCAGCTCAAGTACATCTGAACTCTAAAGCCAAGGAAATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.6=100)
A:
NA
C2:
PF0085623=SET=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development