RnoINT0133875 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39720887-39721714:-
Coord C1 exon
chr15:39721615-39721714
Coord A exon
chr15:39720981-39721614
Coord C2 exon
chr15:39720887-39720980
Length
634 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
CTCTCTTACTTTCTTTGAAGGGA
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGAAATGAATAATAGAAATATTTCAAGAACTCAGCGTCATTCAGTCATTAGAAGACCTAAATCCAAGACAGATGTTTTTCATTACAATGAGAAAAACATG
Seq A exon
GTAAAACATGAGCTCACTTGCAGTGTTAGTGCTTGTTGGGGAGGGACAATTGAGGAGGATCATGAGTTTGAAGTCAGCTTGGGCTACATAGCAAGACACTATCTTGAAAAACAAGAGAGATGCCTCTCCCAGGACATCAACCACTGTCTTACCTTTCTAGCCTTTACCAAAACATTTATGCTACATAATACTATGTAGGCTCTGTTTTGTTATTTTGAACATACATGCTATGTTCAAAAGTCTGAGGTACAAATTTATTATGTTTTTAGCCCAAATAATATCTTGACTAATGTAGTTGTAGCTTACTAATGTGCCTAGAAATAGACAGTTCAAAATGGACACCGTGTGCCCCACTTATGTCAGAGCTCCTCATAACACCAGGTTTGTAGCTGTTCAAGTCTAACCAACTCTATGTGCTCTATAAAGAGTCATACGTGTGAAGAGGCCCCGCTGCCAAGTGCTTTTTTCCTGGCTTGGAAAGCACAGCTGTCTCTCTTACTTTCTTTGGAAAGCACAGCTGTCTCTCTTACTTTCTTTGGAAAGCACAGCTGTCTCTCTTACTTTCTTTGGAAAGCACAGCTGTCTCTCTTACTTTCTTTGGAAAGCACAGCTGTCTCTCTTACTTTCTTTGAAG
Seq C2 exon
GGATTCGTTTGCTCATATTCTGCTGCCCCAGAAGAGAAGAATGGATTTAAACCAGCTCAAGAACACCTGGACTCTAAAGCTAGGAGAGCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.695
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.7=100)
A:
NA
C2:
PF0085623=SET=PD(18.2=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]