HsaINT0148394 @ hg19
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50038157-50042096:+
Coord C1 exon
chr13:50038157-50038192
Coord A exon
chr13:50038193-50041999
Coord C2 exon
chr13:50042000-50042096
Length
3807 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
CACATTATTTTTTTGTGTAGATC
3' ss Score
7.28
Exon sequences
Seq C1 exon
GAGCATCACAGAAAGAAGTGAATGCCCAAAGCAGTG
Seq A exon
GTGAGATTTGAGAGCACATTATACCACCCTAATAGGTGAAAGGGAGGAGCAGAGGGGCACTTCTGGAAGAACACATGACTTCAAAGATAAATGGGTCCTATGAGAATAAGTGAAAGATTTGTAACAGTGTCTGTCTGAGTATAGTACTGACTTCCTCTGCTCTCCCTGATTAGATGAAATCATTCCTGGTTGATGAAACTTCTGGGAGGGGATTTATGACAATTGAGTTTCTTTTTGGGAGGATCGATTTTTAGACAGATAAGGGAACTCCAGAGACAACTTCTTCCTGTATTTGTTCATTCTCAGATGTCTTCAATTCAAAATAATCTTTATGTTACTATATCTCATCTGGACAATCCTTAAGGGATTATATTTAGTTTTGCAAGAGAGAGGCTTTTAACCTCACTTGTTACCAAGAAAAATGGTAACAACTAATTCTAAACATTTCTTTTCTTTCTGAAGAACCTTTTTTTCCGTAAAAAGTAAGTTGGTTTTTGTTTGGGGTCTTTTAAGGAAATAATTTTATCAATAGAAATGCCGAATATTATAATTTCATATTTTTATGTAGTTGGTCCATCTGAAATGTAACAAATGCATCAAGATAAGAGTATATTTATTTGCTAGCAGTGAAGTGTTTTTAAGTAAACAGTTGGGGAGAGTTATGTAACTGACACTGTTGGCAAATGTAAGGATTGAAAACCTTTGGTAATAAAGGTTCATGTGGGCTGAATACAGTGGCTCAGGCCTGTAATCCAAGCACTTTAGGAGGCTGAGGTGGGAGGATCACCTGAGCCCAGGAGTTTGAGACCAACCTGGGCAACACAGTGAGACCTCATCTCTACAGATAATAAAAAAAAAAATTAGTTGGCTGTGGTGGTGTGTGCCTGTGATTCCAGGTACTCAAGAGGCTGCAGTGGGAGGATCGCTCGAGCCCAGGAAATCAAGTCTGCAGTGAGCTGGGATCACACTACTGTACTCCAACCTTCCAGCCTAGGCAAGAGAGTGAGACCCTGTCTAAAAAAAAAAAAAAGTTTCACGCTAGCATTTATTTTAAAAAGAAGGTTGGGAATGAGAGAAACAAAAGAACTTTGTGTTGAGGTCAAAACAAGCTGTCCTGGATCCAACCTAGACTCCCCAGGCTGTCATCAAACCGCTAATTATGTTTATTTTTCTTGATGTTGTGTAACTCTCAGTATTTGCTCTGTCTCCATATGAAGGACTGGATAGTGTTTTCTTGAGAGAAATTATTTCCCTTTCCTCTTTTTTCTAATGACTAATGTTAAATCCTCATGTTTTTGAGTAAATCCTATTTCCAACTATGCTTGATATACATTTGTTTTGTTCATATTTGTTAATATAGATTTATATAACTCATGCAAATAAATTAGCTGGAGGAAAAGTCAGAAACTCTTATTATTTGTAAAATTAATTTCTAATCAGTTATAGCTGTGAACCAAAAATAATCAAAAGGGTCAGAATCTAATTTTTTTTTTTTTTGAGACGAAGTCTCACTCTTATCCCCCAGGCTGGAGTACAATGGCACGATCTTTGCTCACTACAACTTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCACCTGCCACCACACCTGGCTAATTTTTGTGTTTTTAGTGGAGACAGGGTTTCACTATGTTGGCCAGGATGGTCTCAAACTCCTAACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGCGCCCCATCCAGAATCTAATTTAAAGAGAGTTTATTCAGGTGCAAAGTGTAAGGGTAGCCATCTGAGGACCAGTGCTACACCAAAGAATACTGATAAGTGCTTCTGGTGTGGGAGAAATGAGGATTATTTATATAGGCAAAACAGAGGTGTTGAACAGGATTACAGCATTTTTGTACAAAGGGTAACATACAGATATTTGATTGGCTACTGTTGATTACACTCTAAGTGGGTTGTCCAACATTCTGTTGTAAACAGGTAACAGTCACAAGGGTCTCTTTCTCCATATCATTTAGACTAGGTTTGAATAAAGAATAGGGAGTCTTGACTGGGCGTGGTGTCTCAGGCCTATAATCCCAGAACCTTGGAAGGCTGAGGTGGCAGGATCACTTGAGTCCAGGAGTTCAAGACCAGCCAGGCTTGAGGTAGAGATTCTACCTCTACAAAAGAATTTTAAAAATCAGTCAGGTGTGGAGTTGCACACCTGTAGTTCTAGCTACTCTGGAGGCTGAAGTGGAAGGGTAGCTTGAGCCTAGGAGTTCAAGGTCACAGTGAGCTTATGATCACATCAACGTACTCCAGCCTGGGTGACAGAGCAAGACCTTGTGTCTTTAAAAAAAAAAAAAAAATGTGGAGTCTAGTTAATGTGTAACATCTCAACACAGAAGTCAGAAAGCAATGGTCATGCACCAAAGAAAAAACAATCATGTTACATGAGTCCTCTTTCAGGGCTTAACTTTTCCCTTTGGCATAATAAATTTGGAAGGTCCTAAATTTTTATTTTCTTTTTACATAGCTCTCTTCAACTATCAGACTTTTATTTATTCATTTATTTTAGAGAGAGGGTCTTCCTCTGTCGCTCAGGCTGGAGTGCAGTGGTGCAAGTATAGCTCACTACAGCCTACGGTTCCTGGGCTTAAGCAGTGTTTCCACCTCAGTTCCTAAATAGCTAGAACTACAGGCATGCGCCACCATGCCTGGCTAACTTTTTTTTTTTTTTTTTTTTCTGTCGTAGAGACAGGGCCTTGTTCTGTTGCTCAGGGGGGCCTTAAACTCCTGGCCTCAAGTAATCTTCCCACTTTATCCTTCCAAAGTGATGGGATTACAGGGATGAACCTTGTGCTTGGCTCAGCTATCAGATTTTAAACCTTTCTTTACTTGGAAAATTAAAGACAGATATTTGTTTTTCAGTTAGCCAAGGAGCAACCTTGAAATACAATATCCTTTTATTAAACTTCTTTTGAGGGGGAAAGTAAGTTATAATTTTTTTATTAGAAAATAAATATACTGGGCCAGGCATGGTGGCTCATACCTGTAATCCCAGCCCTTTGGGAGGCCCAGGTGCACGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATAAAATCCTGTCTCTACTAAAACTACAAAAATTAGCCCAGCATGGTTTTGCATGCCTGTAATCCCAACTACTGGAGAGGCTGCGGCAGGAGAATCGTTTGAACCTAGGAGGTAGAGGTTGCAGTGAGCCAAGATCATACCACTGCACTCCACCCTGGGCGACAGAGTGAATGAGACTCTGTCTCAAAAAAAAAGAAATGTGAACAACTAGATCAAAAGAGATACCCAGATACTTCATCCCCTCCCTAAAATAGTTGTAGAGCAATAGGAAAACAAAAGGTACATAAATTTTTCATTTTCTGACTTTTATAGAGCCTTTAAGAATTATGTGATTTCTCTATAAAATGCATGCAGAAGTAGGGATACTCAATGTCCACCTTAAAGATTGGTTAAGCTTCAAATCAAGTTCAGGCCAAACTAGAGTTTCTACAGTAGAAATCTTTTCTGTCCTCAGTATTTTATCCTAGTTTATTCATATTTTTGAAAATATTGACACTTAATCTTTTGCCTCAATCTTGAAACCTTACTATGTTTGCAAATTTTAGGGATCCATATGGGCAGACTCTAGTCAATGAACATATTACTTGGGTACTTATAGCAAATGGTTTTTAACTTGGTATATTTGTTGCTCACATTATTTTTTTGTGTAG
Seq C2 exon
ATCCTATGCCTGTGACTCAGAAGGAACAGGAAAACAAATCCAATGCATTTCCCTCTACATCATGTGAAAACTCCTTTCCAGAAGACTGTACATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-SETDB2:NM_031915:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.576
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=FE(14.5=100),PF0178512=Closter_coat=FE(16.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)