BtaINT0131674 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19119624-19123574:+
Coord C1 exon
chr12:19119624-19119689
Coord A exon
chr12:19119690-19123477
Coord C2 exon
chr12:19123478-19123574
Length
3788 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTCGTAATTTTTTCATGTAGATC
3' ss Score
7.19
Exon sequences
Seq C1 exon
AATACATCCAAGCAATGATTCTAGTAAAAGATGCAATTATAAACCACAATTCAACATTGATAAAGG
Seq A exon
GTATGTACATTTCTAATCCTAACCTACAATATTCTCTGCTGTTTTCTTGCTTTGAAGCAAGCCAGCCTTAATTATGTTGCATTAAGCAAAGACAGTTTAAGATAAAACTGCAGGATCCATATAGGTAAGTTATGGAAATCATGTGTTCCTAGTCAATGAAAAGTCCTGCCCATCCAGAGATAGGAAATGCACACTCTATTAAACCTCTCAGGAAGAGCAAATGTATCTCTTCTTCAAAAAAGCTTCTCCTATAAGAAGCACAAACAGAATCCAAGACTCCAAACCATTGTAAACCTGCTTTGTGTAAAGAACAATGCTAGAAAGATATATTTTGGTATAGATAAATTGATGGAAACTTTTTTCATTTCTAGATTATTATTAGAACATCAGTGTATCAACTTTAAAGGAATTGAACAAAGATGATGTACTAGGATTAGAAAAAGAAAAATTGAGAAGCTATTGTAGGTAAAAAACAAGGTCCTACTGTGTAGTACAGGGATCTGCGTTCAATATGCTATAATAGTCCATATTGGAGAAGAATATGAAGAAGAACATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAACTGAGTCACATTGCTATATAACAAACACAACACTGTCTATCAATTATCCTTCAATTTAAAAACTTTAATTAAAAAGTTATCAGAATCACTAGCTTATAAATCTTAGACTATCACTAATTTGCTAAAGCGTTGAGGAAGTACATTTTCTAAATTTTAATACTGCTAAATATTTTCAACAGATTGTAATCATTTTAACTGTCATAATTTGGAGCCTTAGAGTTTTAAATCTCTGAAAATATGGTTTAACATCATCAGTTTATTTTTTATTTTTTAAAATATATATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTTTTGGTTTTGCCATACATCAACGTGAATCTGCCACAGGTGTACACATATTCCCCATCCTGAACCCCCCTCTCACCTCCCTCCCCATACCATCCCTCTGGGTCTTCCCAGTACACCAGCCCCGAGTATCCTGTATCATGCATCGAGCCTGGACTGGCAATTTGTTTCACATATGATATTACACATGTTTCAATGCCATTCTCCCAAATCAGCCCACCCTCGCCCTCTCCCACAGAGTCCAAAAGACTGGTCTCTTTTGCTGTCTCTCATATAGGGTTATCGTTCCCATCTTTCTAAATTCCATATATATGCGGTACTGTATTGGTGTTTTTCTTTTTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTTATTAGAACTGATTCAAATTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATATGCATCAGTTTATTTTAAAGAAAGGTTTTGTTATTCAGAAATGTTTTCAGTTTCAGTCGCTAATGTAAAGTTTCAGAAGAGAGTACATTCTTTCAAGAAAACAGTCTTTCTCCCAGTGGCCTACAGTAGTACTTAGAATCAACATACCCTTAAGGGGTTAGATTAGTTTTCTAAGAGAGAACCCTATAAGTGCAAGAGGTGGTAAGAAGAAATAATTCTAAACAGCTTTTTTCTTTCTAAATAATCTTCCCCAGTAAAAGAAAGTAAGTTGGGTTTTTGTCTTGGTTCTTTTAAAGTAATGATTTCATTAGTAGAAATGCAGAGTATTCTGGTTTCATATTTTTATATGTTCATCTGAAGTATAATAAATTTATCAAAATAGAAGTATATGTTTGCTAGTGGTAGAGCTAGCAAATGTTTTTAAAGTAATCAGGGAATTATGTAGTGACATTACTAGCAAATGTAGGGGTTAAACACTTCATAGTAACTTTATTAAACTTTAGGTTTCATATTAGTATTTATTTTAAAAGGAATACTAAGACTGGGAGAAACAAAAGGACTTGGTGTTGAGGTCAAAACAAGCCATCCCAGATCCAGCCTGAACTCCCCAAACCACTAATTTACGTTTGATTTTTCTTTGCTTGTGTATAATTCTATAAATATTTGCTGTGTCCCTATACAATGACCCTATACAGAGTCATTGGAAAAGACTGATGCTGGGAGGGATTGGGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGACTGACTCGATGGATGTGAGTCTGGGTGAACTCCAGGAGTTGATGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTTGGACACGACTGAGCGACTGATCTGATCTGATTTGATCTGATCCCTATACAAAGAACTGGATACTGTTTTTTTGAAAGAAATTATTTCTCCTTTCTCCTCTTATCTAATGGTTAATATAAAATCTCCATGTTTTTTGGTAAATGTTGTTTCTGACTATGCTTATATACCTTTGTTATATTTGTTATCTGTTAGTATGGCATTATATGGCTCATTCAAAGAAATTTCCTGGGAAAAATCAGAAATTCTTAATTTGAAAAACTTACTTTTTTTTTTAAAGGCTGTGCCATGTGGCATTGGGTTATTACTTCCCCAAGCGGGGATTGAACTTTTGCCCCCTACTACATTGGGAGCACAGAGTCTTAGCCACTGGCCGAAACTTATTTATTAATCAGTTATTGTAGCTCTCTTCATCTATCAGATTTTAAATCTTCTTTCTTTACCTCAGTAACTAAAGAGGGATATTTGCTTTCCAGTTAGCCAAGGATGACCTTGGATTAGGGCTTCCCATGTGGCACTAGTGGTAAAGAACCTGCTTCCCAGTGCAGGAAGCATGAGACGCAGGTTCGATCCCTGGGTCAGGAATATCCCCTGGAGTGGAGCATGGCAAATATTCTTGTATTCATCTCCAGTATTCTTGCCTGGAGAATGCCATGGACAGAGGAGCCTGGTGGCCTAAGGTCACAAAAAGCTGGACATGACTGAAGCGACACATGCATCTACACACATGACCCTGGATTATAACTTAAACTATTCTTTTATTTTCTTAAACTTTTTTTTTTCTGTTTAATAAGACTGGTCTACACTGAAGGACCAGTGCAAGTTAATAATAAGGCAGGAAGAGAATCACTTTTTTATTAAGGTCTACCACTGCATAGGAAAAAGCATGATTAAAAACAATTTTTTAAAAAACAAACATAGACTGTTCTGCATATTCATTTTTTTTTTTTTCCCAAAATAAGAGCAGGAAATCTATGACTTTTTTTCATTAACTGCATAGCTTATTTGTGTAGTGAAGTCATGTTAGAGAGTAAGAATAGGTGAAGTTGGAAAACACAGCGACAAGAACGAACCAGGGACATCCTGGCTCAAGATGAAATTAAGTGCAGAAAGATACAGGGGAGACTAAGAGAACTATGAATGAACAAATGAAAAGACAAAAAGAGCAGCCCAAATACTTTTCCCTCTTCTACAAAAATAGAAAGTAATAGAATAATGAGAGAGCAAGAGAAACGTAAAGGCTTCCTATTTTGCGACCTTAATAGAGTCTCTGAGAGTTACACTATTTTTTCTGTAAAATACAAGCAGAAATAGGGATACTTGATGTTTGCTTTAAAGGATGATTAAAATTCAGATAAAGTTTGGGCCAAATTAGAATTTCTGCAGTAGAAATTTCTTCTATGTCTTATTTTATCCTATCTTATTTTCTTAGTATTTTTGAAAATGTTGATACCTAATTTTTGCCTCAATTTTGAAACCTTAATGGTTTCAGATTTAAGGGCTCCTTATATCTCTAGTTAATAGAGTTATTAGTTAGATATTACAGTGACTCATTTTTAACTTGTTCGTAATTTTTTCATGTAG
Seq C2 exon
ATCATAGATCTGTGACCAAGAACGCAGAAGAAAACAAGTCAAGTTCATTGCCCTCGACATCATATGAAGACTTCTTTCCAAAAGACTGCACCTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development