RnoINT0133869 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39731970-39735166:-
Coord C1 exon
chr15:39735101-39735166
Coord A exon
chr15:39732067-39735100
Coord C2 exon
chr15:39731970-39732066
Length
3034 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTTTGTACTTTTCCCTGTAGATC
3' ss Score
11.29
Exon sequences
Seq C1 exon
ACTATGTCCAAGCAATGGTTCTGGTAAACGAAGCAACTCTGAGTAACAGTCAGACACTGGAAAAAG
Seq A exon
GTATGTTTATTCCTTACTCCAATCCTAGTATTCTTTGTTCTTTCCTTGCCAGCCTTAAACTCTCAGGTTAGTTAAAGGTAACTTGAGGTGACACATAAGATCTGTATTGCTAAGTATTAGGAACCACAGTTTCCTTTGTGAAAAGCCCTACCCCTCCAGAGACGGGGAACACACTCCTACAAAGTGCCAAGAAGAATGAAAGTCTTCATAAAGCCTCATGTAAAGAGGGCACATAGAATTCTAAGACTCTATAGCATTGTGAACCTGTTTTCTATAAAGAGCACTATTGGGAAGGTACATTCCATTATAGGTGAGTTGATGAATTTTTTTTTTATCTTGGTTTGAAATCTTCAGTTTTCTGAGAACTAAGTATGTTTGGCTTAAAAAGATCAAAGATAACAAAGAAAACTTTATTTTTGGGACTTCTGATATTAGATATGTATTTTCTGCAGCAAGCAAGTTTCTGGTTTAAAAAAATATAGCTCCCTGTGAGGCGTCACACGTTAAGCAGTCAGTATCCCAAGACTTACCCTTACTGGAAATGTCAATCACAAACTTTGGGCCTCTATTACTTCTGGCTGACTTGGCTAGAGTTTAGGGGTTCTCATAATACCCACCATAGGTGTTATAATTTGCTGGAGAGGTAGTTCAGTGCTTAAAATGGTTTTCTGCTTCTCCAGAGGACCCAAGTTCAGTTCCCGGCACTCATGCTGGGCACCTTACATTCACCTGTACCTCCACCTTTACAGGCTCTGACACCCTTTTCTGGTCTCCGTGAGCACCTGCACTGATGTGCACACAACACTCCTCCACACACAGATATACATGTATGCATACCATAACAAAAATCTCTTTTACATTTTTTGATGCAATAGCTCAAGAAACTGGAGGAAATTATTTCATCTTTTAACAGTTTATTATGAAAAGTATAAGATATAAATTAACAGCCTGGTGAAGCAGCATATGGGAGATGAGGAGCCTTGAATGGAGGTACTCCAGTCTCAAATTTGGGGAGTATGCTACCCTCCTAATACATAAATGCTTTCATCAACCTAAAAACCCTCTGGTACCCCTCCCCCATTATTTAGGGCATTTGTGGAGATCTCATTACATAGGCAAGAATGCATTAATATTTGCCACTGGTGATTGGCTTCAGTCTGAAAATACCAAGCCTGTAATTATGCTTTGTTTTTTTCTAGTGGATCAGCCACCATGCTGGGGCTCTAGGGATTCTCATTAGTGGTCGTCTCAGTAGCAATCTAGACAAACATCACCCTGGAGGTTCAAAGCCCTTAGAACAAAGACCATAAGTTATAATAGAGTATGCTGCTCTCTCCCTGACACTCAGGAGATTACAAGGATTTTAATAATTTGATATGGAACTAGGGCAGACCAAATAAATATTTCTTGTTATGCTACAAATTCCAAGACTAGAAAAGACAGTTTGAAGTTATTTTATCAGTATTACCACTCCATAAATTTTAATGTATCATAACTGTACCTTATATGTTGAAAGTGCATTTATCAAATTTTTATTTATATTGTTAGATATCCTCAACAAACTTTGCATCAAAATTTGGAGACTTAAAGTTTTTAATGCTATCAATAGCTTATTTTGGAAAATGTTTTTCTCACTATTCTTAATTTCAGTACTAATGTGTATTTTTACAATAGGTTCTCAAAACCAAATATTTCCTTTCACAGTATTCTTCAGTGACATTTAAGATTACAAGGAAAGAAACCCTTTTTCTGCATCTGAGATTGGGGACTATAAATTAGACTCAGAGGTGTACAGTTGTATTGATTCAATGTACATAGACGTTCATAAAGGTGAATTCTCAACATAGCAGTGAATTTTGATTAGTAAGGCATGGAAAGGCAAAGGGAACTTTGCAACAAACGATGGGTTCTTAGAAGAGAGTGGAAGGACAGAGAAACAGATGTGACTTTGGAAAGGTAAATGAGCCCTGAGGAAAATACACATGATTTACTATACATTGAAATAGTGTCTGCATTGTCATGGTGTTGACATCCTTCCTACATTGAAACTTCTGGAAGAGGACATTTAGAATCTTTTTCTTCCTTCTTTTCTTTTTGAGGATCCATTTTTAGACAGTTAAAGAGGAAAGAAAGCCTTTTCCTGCATTTGTTGATTTTCAGACATTGCAGTTCAACAATCCTGTTGCTACTTAACACTTCTGCAGTTTCAGGATGGACACACCCTTCAGGGATTCCCGCTCCATGGGGGAGGGGAGTGGGAATAAGGAGTAAATCCTAACAAGTATTTCTTTTCCTCTCTAAAATAACTTATTTGCAACTCAGTCGAAATTTTGTTTGGAGTCGTTGGCAACAGAGACGATATGTCATGATTTTATGTTTTATGTCGTTTATCCACCGATGCAGCAGTTTGATGAGGACAAATTGTATCTGTTTGCTAGTGTAGAAACAAAGGGCTCCGTGTCAGGGTCAAAACAAGCCCTTGGAAATGCAGTGTGTGCTCCCTAGATACTGATTAAACACCAATTACCCCTGCCTCCCTTGCTTAGTTACTACTGCGGTTACTTGTTGTTTCCCCATATGAAAGCAAAGGAAGAATAGAGTAGAGGGTAAAATGATACACAGGAAATAATTAGGCAAATAGATCAAAAGAAGTATCCAATCCTTAAACCCTGTCTCCTCCGACACACAGTGAGGAAGCAGAAGACCCTAAAAACGTTTATGGCCTTTAAAGGCCTGAAGATGCTATGCCGCCTGTTTACAGAATATAGGCACAACTGCCACTGCTTTAAATATCTACTATTTTGATTAAATTGATATCAAACTCATTCTCAGGAGTAATTTCTCCAAAGCTTTTAAATTTATATTGAATTGTTTTCTTAATACTTTTGAAAATATTGGCAATCTTATGGTCTCAAAATTTTAGTATCTTTGGAAATTATAGTGTTCCATTTGGGCAGAATTTCTGGTCAGTGAAAATATTATTGACTATTTTAATGAATTATTTCTAACTTCGTTTTTGTACTTTTCCCTGTAG
Seq C2 exon
ATCATACACCTGTGACTCAGAATGAACAGAAAAACAAATCAAATGTGTTTCCCTCTACATCATGTGAAAACCCCTCCCCTGAGGACTGTATCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]