HsaINT0148385 @ hg19
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50035233-50042096:+
Coord C1 exon
chr13:50035233-50035298
Coord A exon
chr13:50035299-50041999
Coord C2 exon
chr13:50042000-50042096
Length
6701 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
CACATTATTTTTTTGTGTAGATC
3' ss Score
7.28
Exon sequences
Seq C1 exon
AATACATCCAAGCAATGATTCTAGTGAATGAAGCAACTATAATTAACAGTTCAACATCAATAAAGG
Seq A exon
GTATGTACATCTCTATTCCCATTGTAGAGTATTCTCTGATATTTTCTTGCCATGAAGCAGGATAGCTTTAATATGTTGGGCTAATTAAAGATAATTTAAAATAAAATCTAACATCCACATTTCTAAGTTACATAAATCACAGTTTCCTCTGTTAAATGAAAAGTCCTACCCATCTAGAGATAGTAAATGCACATCCAACTAAGCAGCCTAGGGAAAGAATTAACAAATGTGTGTCGTCTTTGGGGGAAAAAAAGACTTTCTTATATAAAGAGGGCAAATAGAATTCTAACTTTAAAACACTATATATCCGCTTTCTGTGAAGAACAATACTTGAAAGATATATTCTTGTATAGATAAGTTGGTGGGTAAATCTTTTATTTCTAGATTGCTTTTAGACCATCAGTCTTCCAAGCTCTAAATCAGCTTAGAAGGATCAAAGATAATGTACTAAAGAAAAACTGTTTCTCTTCTCACAAAGCTTCTGACACCAAATGTGGGTTTTCCATGCCATGCAATTCTCCAGTATTCTGTGGACACCAATGGATGTTGTATTCTAAAATTTAATTCAGTTCTGACACTACTACCCAGAGTTAGCACAGATCCCACAGATTAAGGGCTCATTCCCACCAACTTGCTCCCACTTCAGACACTGGTCACAATGCCTGGGCCTCCTGTACTTCTGACTGACTGCTACAAATTAGAGGTTCCCACAACCCCCTCCTCAGATTCCATGATTTGCTATAATGGCTTATAGAACTCACAGAAGTATTTACTATTACCAGTTTATTATAAAGGATATTATAAAGGATACAAATGAATAGCCAGATGAAGAGGTACAAAGGGCAAAGTTGGGAAGGGCCTGAGAACAGGAGCTTCTGTCCCTGTGGAGTTTTGGGGTGTACCACCCTCCCAGTATGTAGATACATTCACCAGTCTGAAAGCTCTCTGAACCCTGTTGTTCAGGGGTTTTGTGGAGGTCTCATTACATAGGCATGATTCAGTCATCAGCCCATTGGTGATTTGCTTAATCTGCCTCTTTCTCTTCCCTGGATATGGGGGTGGAAAGAGTAGGGATGAAAGTGCGAACTCATTAACCATGCCTTTGTCAGAAGTGCCTTGGTCTTTCTGACAACCAGCCCCCATTCTGAAGCTGTCTAGGGATAGCTCACCTCTCAACAGTCATCTCATTAGCATACAAAAGACACTCTTATCACTACTGGAGATTCCAAGGGTCTCAGAAGTTCTTATGTCAGGAACTGGGGATTAAGACAAATATTATAACAGAAGGTGCTCCTCTCATACCTGTTACTTGAAATTAGAAGGGTTTTAGGAATTAGGTCAGGAGCCAGGGCAGAAACCAAATATGTATTTCTTATGATGTTACATGTACTAAGACTTTAAAAAGAAAAACTGAGAAGTTATTTTAACAGGATCAATCACCATTCCATAAATCTTAGTCTGTCACATTTGCTGAAGTTTTAAGGAAGTACAATATTTACTAGGTTTGTATTAATGCTGTTAGATGTTGTCAATAAATGTCAATAATTTTTGTCTTTTATAATTTGGAGCCTTAAGGCTTTTAAATCTCTGAAAATATAGTCTAGCATCACCAGTCTATTTTAAGTAAACCATTTGGTATTCAAAGTATCCTCAATTTCAGTGCTACAGTATAGCTTTAGAAGAGTAGTTTCTTGAAGAAAACAGTCTTCCTTTCACAGTATCCTTCAGTAACACTCGGAATTGTAGGGGAGGAAAAATTTTATCTCAGTGGCTGGGGGATGAGGGCTGTAACAAAAGATAGAAGACAGGTTAACAGGAGAAGAGACATAAACAAATGTGTTAATTTTTTTTTCTTTTTCTTGAGACGAAATCTTGCTCTCTCTCCCAGGCTGGAGTACAGTGGTGGTATCTCAGCTCACTGCAACCTCCCCCTCCCAGGTTCAAGCAATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGGACTACGGGCGCATGCCGCCACACCCGGTGATTTTTTTTTTTTGTATTTTAGTAGAGAGAGGGTTTCACCATGTTGCCCAGACTGGTCACGAACTCCTGAGCTCAGGCAAACTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGTCAACTTTTAATTTTATATGCACAAGTGTTGCGGGAATTAGGAGGACCAGAGAGACCTTCGGGTGAATACAGGAGGATCTTTATTGAGTGCACTCAGACCCAGCAGACTTAACATCCAAAAACTTGGCCCAGAACAAAGACAGCACTTGACTTTTATACACAAGGGGGTGGGCTAGCCTGAAACAAGCTTACAGTGGCATGAAGCGTAGTGGCATGAAAGGGTACAGAGGCAGAACAAAGACAGTTAATCAAATTGTGACAGGTTCATAACTCAGCATTACACGTTTGCTATGCAGCCCAGATGTCTGTTATCTAGGTTTTTCTCTAGTGCCTAGCACAGCTTATTCCATGACCTTCACTGTGGTGCCCAGGTGGCCATAATTCAGGCCTGCTCAGATGGCTCATGACCTTCACTCCACCACTGCTTAGATAAAACAGAATACTTGAAGTTACTAGTTACAGAGAACAGGAATCTATACACTCATACCATAAGAGAAAGGAAAATTTGTTTTTCTCCTCTCTATGTTGAGGGAGTGCTGGGAGAGTCCCAGAGCACATTCCTTTGTGTCCTGGCTTCTTAGATAGTATTAACAAGACTTTTTCTGGGTCTGGGCTGTGCCTATTGCTGCCTCTGGGATAAGTCATCCTAATACAGGAAAGCTTATTTCTCTTTTTAATTTTATTTTTCTTTCTTTAATTCCCTGCCTCACAGGAGCATCACAGAAAGAAGTGAATGCCCAAAGCAGTGGTGAGATTTGAGAGCACATTATACCACCCTAATAGGTGAAAGGGAGGAGCAGAGGGGCACTTCTGGAAGAACACATGACTTCAAAGATAAATGGGTCCTATGAGAATAAGTGAAAGATTTGTAACAGTGTCTGTCTGAGTATAGTACTGACTTCCTCTGCTCTCCCTGATTAGATGAAATCATTCCTGGTTGATGAAACTTCTGGGAGGGGATTTATGACAATTGAGTTTCTTTTTGGGAGGATCGATTTTTAGACAGATAAGGGAACTCCAGAGACAACTTCTTCCTGTATTTGTTCATTCTCAGATGTCTTCAATTCAAAATAATCTTTATGTTACTATATCTCATCTGGACAATCCTTAAGGGATTATATTTAGTTTTGCAAGAGAGAGGCTTTTAACCTCACTTGTTACCAAGAAAAATGGTAACAACTAATTCTAAACATTTCTTTTCTTTCTGAAGAACCTTTTTTTCCGTAAAAAGTAAGTTGGTTTTTGTTTGGGGTCTTTTAAGGAAATAATTTTATCAATAGAAATGCCGAATATTATAATTTCATATTTTTATGTAGTTGGTCCATCTGAAATGTAACAAATGCATCAAGATAAGAGTATATTTATTTGCTAGCAGTGAAGTGTTTTTAAGTAAACAGTTGGGGAGAGTTATGTAACTGACACTGTTGGCAAATGTAAGGATTGAAAACCTTTGGTAATAAAGGTTCATGTGGGCTGAATACAGTGGCTCAGGCCTGTAATCCAAGCACTTTAGGAGGCTGAGGTGGGAGGATCACCTGAGCCCAGGAGTTTGAGACCAACCTGGGCAACACAGTGAGACCTCATCTCTACAGATAATAAAAAAAAAAATTAGTTGGCTGTGGTGGTGTGTGCCTGTGATTCCAGGTACTCAAGAGGCTGCAGTGGGAGGATCGCTCGAGCCCAGGAAATCAAGTCTGCAGTGAGCTGGGATCACACTACTGTACTCCAACCTTCCAGCCTAGGCAAGAGAGTGAGACCCTGTCTAAAAAAAAAAAAAAGTTTCACGCTAGCATTTATTTTAAAAAGAAGGTTGGGAATGAGAGAAACAAAAGAACTTTGTGTTGAGGTCAAAACAAGCTGTCCTGGATCCAACCTAGACTCCCCAGGCTGTCATCAAACCGCTAATTATGTTTATTTTTCTTGATGTTGTGTAACTCTCAGTATTTGCTCTGTCTCCATATGAAGGACTGGATAGTGTTTTCTTGAGAGAAATTATTTCCCTTTCCTCTTTTTTCTAATGACTAATGTTAAATCCTCATGTTTTTGAGTAAATCCTATTTCCAACTATGCTTGATATACATTTGTTTTGTTCATATTTGTTAATATAGATTTATATAACTCATGCAAATAAATTAGCTGGAGGAAAAGTCAGAAACTCTTATTATTTGTAAAATTAATTTCTAATCAGTTATAGCTGTGAACCAAAAATAATCAAAAGGGTCAGAATCTAATTTTTTTTTTTTTTGAGACGAAGTCTCACTCTTATCCCCCAGGCTGGAGTACAATGGCACGATCTTTGCTCACTACAACTTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCACCTGCCACCACACCTGGCTAATTTTTGTGTTTTTAGTGGAGACAGGGTTTCACTATGTTGGCCAGGATGGTCTCAAACTCCTAACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGCGCCCCATCCAGAATCTAATTTAAAGAGAGTTTATTCAGGTGCAAAGTGTAAGGGTAGCCATCTGAGGACCAGTGCTACACCAAAGAATACTGATAAGTGCTTCTGGTGTGGGAGAAATGAGGATTATTTATATAGGCAAAACAGAGGTGTTGAACAGGATTACAGCATTTTTGTACAAAGGGTAACATACAGATATTTGATTGGCTACTGTTGATTACACTCTAAGTGGGTTGTCCAACATTCTGTTGTAAACAGGTAACAGTCACAAGGGTCTCTTTCTCCATATCATTTAGACTAGGTTTGAATAAAGAATAGGGAGTCTTGACTGGGCGTGGTGTCTCAGGCCTATAATCCCAGAACCTTGGAAGGCTGAGGTGGCAGGATCACTTGAGTCCAGGAGTTCAAGACCAGCCAGGCTTGAGGTAGAGATTCTACCTCTACAAAAGAATTTTAAAAATCAGTCAGGTGTGGAGTTGCACACCTGTAGTTCTAGCTACTCTGGAGGCTGAAGTGGAAGGGTAGCTTGAGCCTAGGAGTTCAAGGTCACAGTGAGCTTATGATCACATCAACGTACTCCAGCCTGGGTGACAGAGCAAGACCTTGTGTCTTTAAAAAAAAAAAAAAAATGTGGAGTCTAGTTAATGTGTAACATCTCAACACAGAAGTCAGAAAGCAATGGTCATGCACCAAAGAAAAAACAATCATGTTACATGAGTCCTCTTTCAGGGCTTAACTTTTCCCTTTGGCATAATAAATTTGGAAGGTCCTAAATTTTTATTTTCTTTTTACATAGCTCTCTTCAACTATCAGACTTTTATTTATTCATTTATTTTAGAGAGAGGGTCTTCCTCTGTCGCTCAGGCTGGAGTGCAGTGGTGCAAGTATAGCTCACTACAGCCTACGGTTCCTGGGCTTAAGCAGTGTTTCCACCTCAGTTCCTAAATAGCTAGAACTACAGGCATGCGCCACCATGCCTGGCTAACTTTTTTTTTTTTTTTTTTTTCTGTCGTAGAGACAGGGCCTTGTTCTGTTGCTCAGGGGGGCCTTAAACTCCTGGCCTCAAGTAATCTTCCCACTTTATCCTTCCAAAGTGATGGGATTACAGGGATGAACCTTGTGCTTGGCTCAGCTATCAGATTTTAAACCTTTCTTTACTTGGAAAATTAAAGACAGATATTTGTTTTTCAGTTAGCCAAGGAGCAACCTTGAAATACAATATCCTTTTATTAAACTTCTTTTGAGGGGGAAAGTAAGTTATAATTTTTTTATTAGAAAATAAATATACTGGGCCAGGCATGGTGGCTCATACCTGTAATCCCAGCCCTTTGGGAGGCCCAGGTGCACGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATAAAATCCTGTCTCTACTAAAACTACAAAAATTAGCCCAGCATGGTTTTGCATGCCTGTAATCCCAACTACTGGAGAGGCTGCGGCAGGAGAATCGTTTGAACCTAGGAGGTAGAGGTTGCAGTGAGCCAAGATCATACCACTGCACTCCACCCTGGGCGACAGAGTGAATGAGACTCTGTCTCAAAAAAAAAGAAATGTGAACAACTAGATCAAAAGAGATACCCAGATACTTCATCCCCTCCCTAAAATAGTTGTAGAGCAATAGGAAAACAAAAGGTACATAAATTTTTCATTTTCTGACTTTTATAGAGCCTTTAAGAATTATGTGATTTCTCTATAAAATGCATGCAGAAGTAGGGATACTCAATGTCCACCTTAAAGATTGGTTAAGCTTCAAATCAAGTTCAGGCCAAACTAGAGTTTCTACAGTAGAAATCTTTTCTGTCCTCAGTATTTTATCCTAGTTTATTCATATTTTTGAAAATATTGACACTTAATCTTTTGCCTCAATCTTGAAACCTTACTATGTTTGCAAATTTTAGGGATCCATATGGGCAGACTCTAGTCAATGAACATATTACTTGGGTACTTATAGCAAATGGTTTTTAACTTGGTATATTTGTTGCTCACATTATTTTTTTGTGTAG
Seq C2 exon
ATCCTATGCCTGTGACTCAGAAGGAACAGGAAAACAAATCCAATGCATTTCCCTCTACATCATGTGAAAACTCCTTTCCAGAAGACTGTACATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-SETDB2:NM_001160308:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.576
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=FE(26.5=100),PF0178512=Closter_coat=FE(29.3=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)