HsaINT0148385 @ hg38
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr13:49461097-49464056:+
Coord C1 exon
chr13:49461097-49461162
Coord A exon
chr13:49461163-49464020
Coord C2 exon
chr13:49464021-49464056
Length
2858 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTTAATTCCCTGCCTCACAGGAG
3' ss Score
8.17
Exon sequences
Seq C1 exon
AATACATCCAAGCAATGATTCTAGTGAATGAAGCAACTATAATTAACAGTTCAACATCAATAAAGG
Seq A exon
GTATGTACATCTCTATTCCCATTGTAGAGTATTCTCTGATATTTTCTTGCCATGAAGCAGGATAGCTTTAATATGTTGGGCTAATTAAAGATAATTTAAAATAAAATCTAACATCCACATTTCTAAGTTACATAAATCACAGTTTCCTCTGTTAAATGAAAAGTCCTACCCATCTAGAGATAGTAAATGCACATCCAACTAAGCAGCCTAGGGAAAGAATTAACAAATGTGTGTCGTCTTTGGGGGAAAAAAAGACTTTCTTATATAAAGAGGGCAAATAGAATTCTAACTTTAAAACACTATATATCCGCTTTCTGTGAAGAACAATACTTGAAAGATATATTCTTGTATAGATAAGTTGGTGGGTAAATCTTTTATTTCTAGATTGCTTTTAGACCATCAGTCTTCCAAGCTCTAAATCAGCTTAGAAGGATCAAAGATAATGTACTAAAGAAAAACTGTTTCTCTTCTCACAAAGCTTCTGACACCAAATGTGGGTTTTCCATGCCATGCAATTCTCCAGTATTCTGTGGACACCAATGGATGTTGTATTCTAAAATTTAATTCAGTTCTGACACTACTACCCAGAGTTAGCACAGATCCCACAGATTAAGGGCTCATTCCCACCAACTTGCTCCCACTTCAGACACTGGTCACAATGCCTGGGCCTCCTGTACTTCTGACTGACTGCTACAAATTAGAGGTTCCCACAACCCCCTCCTCAGATTCCATGATTTGCTATAATGGCTTATAGAACTCACAGAAGTATTTACTATTACCAGTTTATTATAAAGGATATTATAAAGGATACAAATGAATAGCCAGATGAAGAGGTACAAAGGGCAAAGTTGGGAAGGGCCTGAGAACAGGAGCTTCTGTCCCTGTGGAGTTTTGGGGTGTACCACCCTCCCAGTATGTAGATACATTCACCAGTCTGAAAGCTCTCTGAACCCTGTTGTTCAGGGGTTTTGTGGAGGTCTCATTACATAGGCATGATTCAGTCATCAGCCCATTGGTGATTTGCTTAATCTGCCTCTTTCTCTTCCCTGGATATGGGGGTGGAAAGAGTAGGGATGAAAGTGCGAACTCATTAACCATGCCTTTGTCAGAAGTGCCTTGGTCTTTCTGACAACCAGCCCCCATTCTGAAGCTGTCTAGGGATAGCTCACCTCTCAACAGTCATCTCATTAGCATACAAAAGACACTCTTATCACTACTGGAGATTCCAAGGGTCTCAGAAGTTCTTATGTCAGGAACTGGGGATTAAGACAAATATTATAACAGAAGGTGCTCCTCTCATACCTGTTACTTGAAATTAGAAGGGTTTTAGGAATTAGGTCAGGAGCCAGGGCAGAAACCAAATATGTATTTCTTATGATGTTACATGTACTAAGACTTTAAAAAGAAAAACTGAGAAGTTATTTTAACAGGATCAATCACCATTCCATAAATCTTAGTCTGTCACATTTGCTGAAGTTTTAAGGAAGTACAATATTTACTAGGTTTGTATTAATGCTGTTAGATGTTGTCAATAAATGTCAATAATTTTTGTCTTTTATAATTTGGAGCCTTAAGGCTTTTAAATCTCTGAAAATATAGTCTAGCATCACCAGTCTATTTTAAGTAAACCATTTGGTATTCAAAGTATCCTCAATTTCAGTGCTACAGTATAGCTTTAGAAGAGTAGTTTCTTGAAGAAAACAGTCTTCCTTTCACAGTATCCTTCAGTAACACTCGGAATTGTAGGGGAGGAAAAATTTTATCTCAGTGGCTGGGGGATGAGGGCTGTAACAAAAGATAGAAGACAGGTTAACAGGAGAAGAGACATAAACAAATGTGTTAATTTTTTTTTCTTTTTCTTGAGACGAAATCTTGCTCTCTCTCCCAGGCTGGAGTACAGTGGTGGTATCTCAGCTCACTGCAACCTCCCCCTCCCAGGTTCAAGCAATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGGACTACGGGCGCATGCCGCCACACCCGGTGATTTTTTTTTTTTGTATTTTAGTAGAGAGAGGGTTTCACCATGTTGCCCAGACTGGTCACGAACTCCTGAGCTCAGGCAAACTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGTCAACTTTTAATTTTATATGCACAAGTGTTGCGGGAATTAGGAGGACCAGAGAGACCTTCGGGTGAATACAGGAGGATCTTTATTGAGTGCACTCAGACCCAGCAGACTTAACATCCAAAAACTTGGCCCAGAACAAAGACAGCACTTGACTTTTATACACAAGGGGGTGGGCTAGCCTGAAACAAGCTTACAGTGGCATGAAGCGTAGTGGCATGAAAGGGTACAGAGGCAGAACAAAGACAGTTAATCAAATTGTGACAGGTTCATAACTCAGCATTACACGTTTGCTATGCAGCCCAGATGTCTGTTATCTAGGTTTTTCTCTAGTGCCTAGCACAGCTTATTCCATGACCTTCACTGTGGTGCCCAGGTGGCCATAATTCAGGCCTGCTCAGATGGCTCATGACCTTCACTCCACCACTGCTTAGATAAAACAGAATACTTGAAGTTACTAGTTACAGAGAACAGGAATCTATACACTCATACCATAAGAGAAAGGAAAATTTGTTTTTCTCCTCTCTATGTTGAGGGAGTGCTGGGAGAGTCCCAGAGCACATTCCTTTGTGTCCTGGCTTCTTAGATAGTATTAACAAGACTTTTTCTGGGTCTGGGCTGTGCCTATTGCTGCCTCTGGGATAAGTCATCCTAATACAGGAAAGCTTATTTCTCTTTTTAATTTTATTTTTCTTTCTTTAATTCCCTGCCTCACAG
Seq C2 exon
GAGCATCACAGAAAGAAGTGAATGCCCAAAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169:ENST00000354234:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.846
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=FE(25.6=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains