MmuINT0142233 @ mm9
Intron Retention
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60042225-60043542:-
Coord C1 exon
chr14:60043522-60043542
Coord A exon
chr14:60042322-60043521
Coord C2 exon
chr14:60042225-60042321
Length
1200 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GTTTGTACTTTTCCCTGTAGATC
3' ss Score
10.38
Exon sequences
Seq C1 exon
AAGTGAATACTCATCGTAGCA
Seq A exon
GTGAGTTTTGATTACTAGGGTAAACTAAGGCAGAGGGCACTTCTAGACAAACAGATAGATTCTTAGAAGAGAGTGGAAGAACAGAGAAGCAGATGTAACTTTTGAAAGGAAAATAGATGTGATATATACATTGAAATAGTGTCTGCATTGGCGTGGTGCTGACATCCTTCCTATATTGAAACTTCTGGAAGAGGGCCTTAGAATTTTTTTCTTCCTTTTTTTCTTTTTAAGGATCCGTTTTTAAACAGTTAAAAGAGGAGAGAAAGCCTTTTCCCGCATTTGTTGATTTTCAAATATTTCAGTTCAACAATCCTTTTGCTACTGTAACACCTCTGCACAGTTTCAGAATGAACACACCCTCAGGGATTACAGTTTTATGGGGGAGGGGGAATGGTAACAAGAAATAAATCTTTTCCTCTCTAAAATAACTTATTTTCAACTCAGTCGAATTTTTTGTTTGGAGTCATTAGCAACAGAAATGATATGTCATGATTTTATGTTTTATATAGTCTATCCACCTGAATTGCAACAATTTTATGAAGAAAAAATATATCTATTTGCTAGTATAGAAAAACAAAAGGGTTTGGTGTTAAGGTCAAAACAAGCCCTTGGAAATCCAGTCTGTACTCCCTAGATACTGATTAAACACTAATTACCTTTTCTTCCCTTGCTTAGTTACAACTGTAATTACTTCTTGTTTTCCCATATGAAATAACAAAGGAAAAAATAGAATAGAGGGTAAAAAGATAAGGAAATAATTAGGCAAGTTTATCAAAAGGGGTAATCCAATGCGTTAAACCCTGTCTCCTGCAGCACATGGTTATAGAGCAATGAGGAAGCAAAAGATACCTAAACTGAACATTTTATGGCCTTTAAAGGCCTGCAAACACTATGCCACTTGTTTATAAAATATAGGCACAACTACAACTACTTTAAGTAACTATTTTTTGATTAAATTGATATCAAACTCATTCTCGGGAGCAGTTTTTCCAAAGTTTTTAAGTTTATATTGAATTGTTTCCTTAATACTTTTGAAAATATTGGCAATCTTATGGCTGAGTCTCAAAATTTTAGTATCTTTGGAAATTTTAGTGTTCCGTTTGGGCAGAATTTCTAGTCAGTGAGAATATTATTGATTATTTTAGTGAATTATTTCTAACTTTGTATTTCTGTTGCTCCTGTTTGTACTTTTCCCTGTAG
Seq C2 exon
ATCATACACCTGTGACTCAGAGTGAACAGGAAAACAAATCAAGTGCGGTTCCCTCTGCATCATGTGACAACTCCTGTCCTAAGGGCTGTACTATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-Setdb2:NM_001081024:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.505
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: