HsaINT0148458 @ hg19
Intron Retention
Gene
ENSG00000174938 | SEZ6L2
Description
seizure related 6 homolog (mouse)-like 2 [Source:HGNC Symbol;Acc:30844]
Coordinates
chr16:29883730-29884064:-
Coord C1 exon
chr16:29884026-29884064
Coord A exon
chr16:29883848-29884025
Coord C2 exon
chr16:29883730-29883847
Length
178 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GGCCTCTCCTCCTCCTGTAGTGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
TTGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAG
Seq A exon
GTCAGTGAGAGCACAGGTGGAGACCCAGGCTGGCCAGGTTGGGAGGGCAAGGCAGAGGCTGGGGCAGGAGGCCAGGCCTTGGAGGGATGAAGCCCAGGGTTTGAGGCCCAGGGCAGGAGGCTGGGAGAGCCCAGGACCGGGCCCAGCCACAGCTCACCGGCCTCTCCTCCTCCTGTAG
Seq C2 exon
TGACCCAGACCACAGATCCATCACGGCAGCTGGAAGGGGGGAACCTGGCCCTGGCCATCCTGCTGCCTCTAGGCTTGGTCATTGTCCTCGGCAGTGGCGTTTACATCTACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174938-SEZ6L2:NM_001114100:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCTGGACAACCGAAAA
R:
TTGGTGTAGTAGATGTAAACGCCA
Band lengths:
146-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)