DreINT0133612 @ danRer10
Intron Retention
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15091934-15092190:-
Coord C1 exon
chr3:15092152-15092190
Coord A exon
chr3:15092052-15092151
Coord C2 exon
chr3:15091934-15092051
Length
100 bp
Sequences
Splice sites
5' ss Seq
AGGGTAACG
5' ss Score
6.18
3' ss Seq
TGTTTACTTTGCTCTTTCAGTTT
3' ss Score
10.35
Exon sequences
Seq C1 exon
TGGCCTATGAAGGACTTCTGGATGATCATAAATTGGAGG
Seq A exon
GTAACGTTGATTATCATTGTATCTGTTATTTTCATTAGTTCAGCAGTCTGGCTAGTTCTGTCACGTAATGATGTGAATGTTGTTTACTTTGCTCTTTCAG
Seq C2 exon
TTTCTCAGTCATTAGACGCCTCCCATCAGATGCTGAGTGAGAACATTGCATTGGCTATCATCCTGCCAATCATTCTGGTCATCCTCCTGATTGGAGGAATCTACATGTACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052:ENSDART00000142594:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146101=DUF4448=FE(17.3=100)
A:
NA
C2:
PF146101=DUF4448=FE(52.0=100),PF0195611=DUF106=PU(62.5=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGACTTCTGGATGATCAT
R:
TGGTGTAGTACATGTAGATTCCTCCA
Band lengths:
150-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]