HsaINT1041381 @ hg38
Intron Retention
Gene
ENSG00000174938 | SEZ6L2
Description
seizure related 6 homolog like 2 [Source:HGNC Symbol;Acc:HGNC:30844]
Coordinates
chr16:29872409-29872743:-
Coord C1 exon
chr16:29872705-29872743
Coord A exon
chr16:29872527-29872704
Coord C2 exon
chr16:29872409-29872526
Length
178 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GGCCTCTCCTCCTCCTGTAGTGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
TTGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAG
Seq A exon
GTCAGTGAGAGCACAGGTGGAGACCCAGGCTGGCCAGGTTGGGAGGGCAAGGCAGAGGCTGGGGCAGGAGGCCAGGCCTTGGAGGGATGAAGCCCAGGGTTTGAGGCCCAGGGCAGGAGGCTGGGAGAGCCCAGGACCGGGCCCAGCCACAGCTCACCGGCCTCTCCTCCTCCTGTAG
Seq C2 exon
TGACCCAGACCACAGATCCATCACGGCAGCTGGAAGGGGGGAACCTGGCCCTGGCCATCCTGCTGCCTCTAGGCTTGGTCATTGTCCTCGGCAGTGGCGTTTACATCTACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174938:ENST00000350527:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCTGGACAACCGAAAA
R:
TTGGTGTAGTAGATGTAAACGCCA
Band lengths:
146-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains