RnoINT0133944 @ rn6
Intron Retention
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198400987-198401324:+
Coord C1 exon
chr1:198400987-198401025
Coord A exon
chr1:198401026-198401206
Coord C2 exon
chr1:198401207-198401324
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTGTTCTTCCTCCCTCCCAGTGA
3' ss Score
9.74
Exon sequences
Seq C1 exon
TGGCCTATGAGGAACTCCTGGACAACCGAAAACTGGAAG
Seq A exon
GTCAGTGAGGGTATAGGTGGAGACCATACCTGGCCAGGTTGGGAGGGCAAGGTCAAGGCTGGGGGCAGGAGGCCAGGCCCCGGAGGGGTGAAGCCAAGGGTTCAGGCCCCAGGGCAAGAGGCTGGGAGAGCCCAGGAGTGGACACAGCCTTGGTTCATTTGCTGTTCTTCCTCCCTCCCAG
Seq C2 exon
TGACCCAGACTACAGATCCATCACGGCAGCTGGAGGGTGGGAATCTCGCTTTGGCTATCCTGTTGCCCCTGGGCTTGGTCATTGTCCTTGGCACTGGTGTTTACATATACTACACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098:ENSRNOT00000037405:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTCCTGGACAACCGAA
R:
AGTGTAGTATATGTAAACACCAGTGC
Band lengths:
146-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]