HsaINT0148465 @ hg19
Intron Retention
Gene
ENSG00000174938 | SEZ6L2
Description
seizure related 6 homolog (mouse)-like 2 [Source:HGNC Symbol;Acc:30844]
Coordinates
chr16:29883730-29884752:-
Coord C1 exon
chr16:29884561-29884752
Coord A exon
chr16:29883848-29884560
Coord C2 exon
chr16:29883730-29883847
Length
713 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
GGCCTCTCCTCCTCCTGTAGTGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
TGAAGTACGAGCCGTGCCTGAACCCGGGGGTTCCCGAGAATGGCTACCAGACGCTGTACAAGCACCACTACCAGGCGGGCGAGTCTCTGCGCTTCTTCTGCTATGAGGGCTTTGAGCTTATCGGCGAGGTCACCATCACCTGTGTGCCCGGCCACCCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAG
Seq A exon
GTGCCTGGCCAGACAGGGCAGGAGGGGCACACCAGTGTCCGGGAAGTGACAGGGCTGGGAGAGTCAGGTAGCACATTTGAGACCAATGGGCGACCCCACAGAGCTCCCGGTTCTCCTCCTGTGGCCTCGTGTCCTCACGGGTGTGTCCAGAAGCCCTGGGTCGTGTGAGGTCATGGGATTGGCTCAGGGGTGTAGTAGAGGGGGCCTTGGCTTGGAAGTCCCTTGCTCTGAATAGGCCTCAGTTTCCCTATCGCTGACAAGTTCTAGTTTGGCTCAGACTGTCCAGGAACCCTGACTTTTTAGGGGTCTGGAGAAAGAGGACAAAGGCCCTGTGCTGGTCACTCCTCTCTCTTCCCCACAAAGGGAGAAAGTTGAGGTTGAGCAGAGGGCAGAGAGAACCAGGCTGTCCAGCCCAGCCCCACCGGGCTCCCGGCCCCTCCCAGCCTCCTCCCCTCCCTGGCTCAGACCCCATCCCCTCCCCCTCCTCTCCCTGCAGTTGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAGGTCAGTGAGAGCACAGGTGGAGACCCAGGCTGGCCAGGTTGGGAGGGCAAGGCAGAGGCTGGGGCAGGAGGCCAGGCCTTGGAGGGATGAAGCCCAGGGTTTGAGGCCCAGGGCAGGAGGCTGGGAGAGCCCAGGACCGGGCCCAGCCACAGCTCACCGGCCTCTCCTCCTCCTGTAG
Seq C2 exon
TGACCCAGACCACAGATCCATCACGGCAGCTGGAAGGGGGGAACCTGGCCCTGGCCATCCTGCTGCCTCTAGGCTTGGTCATTGTCCTCGGCAGTGGCGTTTACATCTACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174938-SEZ6L2:NM_201575:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACGAGCCGTGCCT
R:
TTGGTGTAGTAGATGTAAACGCCA
Band lengths:
310-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)