BtaINT0131744 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26637869-26638863:+
Coord C1 exon
chr25:26637869-26638060
Coord A exon
chr25:26638061-26638745
Coord C2 exon
chr25:26638746-26638863
Length
685 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
GCCTCTCCTCCTCTCTCCAGTGA
3' ss Score
10.03
Exon sequences
Seq C1 exon
TGAAGTACGAGCCGTGCCTGAACCCTGGGGTGCCAGAGAATGGCTACCAGACACTATACAAGCATCACTACCAGGCTGGCGAGTCTCTGCGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTGCCCGGCCACCCCTCCCAGTGGACCAGCCAGCCTCCACTCTGCAAAG
Seq A exon
GTGCCTGGGCATGCAGGGCAGGAAGGGGCATAGCAGTGTCTGGGATGTGACAGAGCAGGGAAAGTTAGGTAGCACATTCGAGACTGCTGAGTTTTCCTGTTCACCTCCCATGGGCTGTCATCCTCAGAGGTAGATCCACAAGCCCTGGGGAAGTTCAAGGTCATGGACTCATCCTAAGGGAAGTAGGACAGGGGGCTTTGGTTTGGCAGTCCCTTGCCCTCTGGACTGGTCTCAGTTTCCTTATTTTTGACAAATTCTACAGCCCTGGTGGGTTTAGACTCCCCAGGGGTCTGGAGAAGGACGACCAAGGCCCTGCCCCCTCCGAGGGAAGGATCAAGCTAAGGTTGAGCAGAGGGCAGAGAAACCAGGCTGTCCGACCCAGCCCCACCGGGCTCCCGGCCCTCTCTGCAGCCTCCTTCCCTCCCTGGCTCAGACCCCGTCCCCTCCCCCTCCTCTCCCTGCAGTGGCCTTTGAGGAGCTCCTGGACAACCGAAAACTGGAAGGTCAGTGAGGGCACAGTGGAGACCCAGGCCTGGCCGAGCTGGGAGGGCAAGGCAGAGGCCGGGGGCAGGAGGCCAGATCCCTGGCGGGGTGAGGGCCCAGGGGTTCAGGGCCCAGGGCAGGAGGCTGGGAGAGCCCAGGGTGGGCCCAGCGCCAGCTCACTGGCCTCTCCTCCTCTCTCCAG
Seq C2 exon
TGACCCAGACCACTGACCCGTCACGGCAGCTGGAGGGTGGAAACCTCGCCTTGGCCATTCTGCTGCCCCTGGGCTTGGTCATCATCCTTGGGAGTGGTGTTTACATATACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955:ENSBTAT00000010460:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACGAGCCGTGCCTGAA
R:
AGTATATGTAAACACCACTCCCAAGG
Band lengths:
302-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]