RnoINT0133943 @ rn6
Intron Retention
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198400303-198401025:+
Coord C1 exon
chr1:198400303-198400494
Coord A exon
chr1:198400495-198400986
Coord C2 exon
chr1:198400987-198401025
Length
492 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
TCCCCCTCCTCTCCCTGCAGTGG
3' ss Score
11.81
Exon sequences
Seq C1 exon
TAAAGTACGAGCCATGCCTGAACCCCGGCGTTCCTGAGAATGGCTACCAGACATTGTACAAGCATCATTACCAAGCGGGGGAGTCACTACGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTACCTGGGCACCCCTCCCAGTGGACAAGCCAGCCCCCACTCTGCAAAG
Seq A exon
GTGCCTGGGCAGGAGGGCATATCAATATACGGGGAGTGACAGGGCTAGAAGAGTTGGGTAGAAAATTCAAGAAAAATGGCCGACCCTGCTGTGTGCCTATCGTGTGGACTCTCATCCTTATAGGCATGACTGGAAGACCTGGGGAGATTTGAGGTCCCAGATTAATCAAGGGATGTAGTGAGGGTCTTGGTTTAGAGGCCCCCTGCTCTCTCTACAAAGGGAGAGTTTTGCTATCAGTGAGTAATTCTGAAGCTGGCTGGCTCAGACTGTCCAGGAACCTTGACCCTTCAGTGATCTGAAGGAAGAAAACAGGCCTTGACCCATCAGTCCCCATGGTCTCCATACACTCAGGGAAAGACAAGTTTAGATTGAACAGAGGGCAGAGAACCAGGCTGTGCAGCCCAGCCTTGCCCCACCGGGCTCTGGCCCTCTCCTCAGTCTCCTTCCCTCCCTGGCTCAGACCCCATCCCCCTCCCCCTCCTCTCCCTGCAG
Seq C2 exon
TGGCCTATGAGGAACTCCTGGACAACCGAAAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098:ENSRNOT00000037405:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGTACGAGCCATGCCTGA
R:
TTCCAGTTTTCGGTTGTCCAGG
Band lengths:
230-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]