GgaINT1024897 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912318-5912637:-
Coord C1 exon
chr19:5912440-5912637
Coord A exon
chr19:5912357-5912439
Coord C2 exon
chr19:5912318-5912356
Length
83 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GTTGTTTCTCTCCATCCTAGCTT
3' ss Score
7.23
Exon sequences
Seq C1 exon
CGGAGGCGTACGAGCCATGCCACAACCCCGGCGTGCCCGCGGGCGGGCGGCAGAGCCCCGAGCGGCGGCTGTACCCGGCGGGCAGCACGCTGCGCTTCTCCTGCACCGCTGGGCGGGCGCTGCTGGGTGAGGGCAATCTGCGCTGCCTGCCCGGGCACCCCTCGCGCTGGAGCGGCTCGCCTCCCATCTGCAAGGCGG
Seq A exon
GTGAGCAAAACCCTCTGGCCCTGTGTGACTCTGTTTTTCCCCCTCGCTTCCCACTGACATTGGGTTGTTTCTCTCCATCCTAG
Seq C2 exon
CTTCCTATGATGAGTTTTACAGCAATCGCAATCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTGCGCTTCTCCTG
R:
CGTCCAGATTGCGATTGCTGT
Band lengths:
152-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]