BtaINT0131710 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20880883-20881397:-
Coord C1 exon
chr19:20881200-20881397
Coord A exon
chr19:20880922-20881199
Coord C2 exon
chr19:20880883-20880921
Length
278 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCCCTCCCCTCTTATTCCAGCCT
3' ss Score
8.17
Exon sequences
Seq C1 exon
TGGAACAGCTCAAACCGTGCCATGGCCTCAGCGCCCCCGAGAATGGTGCCCGCAGTCCCGAGAAGCGGCTGCACCCAGCGGGGGCTACTGTCCACTTCTCATGTGCCCCTGGCTATGTGCTGAAGGGCCAGGCCAGCATCAAGTGTGTGCCCGGACACCCCTCACATTGGAGTGACCCCCCGCCCATCTGTAGGGCTG
Seq A exon
GTGAGTGTCCTACCATCTGCTGAACCTCTGCCTGGCCCACAGGGCTGCCCTGGCAAAGATGTCAGAGGCCAAGAACCAAAACCCCTTGCCCACGGCACCCCCACCTCTTATGTTATTCCTGGTTTCTCGGGTGTCTGCCAGATCCTTCTGACCTGGTGACAAACTCTGGGGTGGGCTCCACTTGGACAAATTCCTCCCCATGACCAGCCCCCTCCCTGCCTTTGTGGTCTGGCTCTTTGGGCTCACCCACGGCCCTTGGCCCTCCCCTCTTATTCCAG
Seq C2 exon
CCTCTCTGGACGGCTTCTACAGCGGCCGCAGCCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979:ENSBTAT00000021257:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGCTCAAACCGTGC
R:
CTGCGGCCGCTGTAGAAG
Band lengths:
229-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]