DreINT0133580 @ danRer10
Intron Retention
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24597476-24597907:+
Coord C1 exon
chr15:24597476-24597670
Coord A exon
chr15:24597671-24597868
Coord C2 exon
chr15:24597869-24597907
Length
198 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
AGCTCTCACTTTTCCCCCAGCGG
3' ss Score
8.25
Exon sequences
Seq C1 exon
CGGATTCGTTTGAGCCGTGCAGGAACCCTGGCACTCCGGCCTACACCATCCAGAGCTCTGAGAAGCACGTGTATCAGGCTGGAGAAACTGTACGCTTCTCCTGCATGAATGGGTACGAGCTCCAGGGCGAACCTGTTCTCCGTTGTGTCCCCGGGCATCCTTCCAAATGGAGTCATCCACCGCCGCTGTGCAAAG
Seq A exon
GTAGCCTGTGTGTTTTGCAATGCTCATGAAGCGTGATCTGCATACTATATCATTCATATAAAGGTCTCTTTCCTGTCTGCGGTGCATGTTTATTTATTGATGCATTGTTTCTCTTCAGGGAAAGGAGTGTTTGTTTTGAATAATTGGTATGACAAGCTACATTTTCTCATTTGTTAAAAGCTCTCACTTTTCCCCCAG
Seq C2 exon
CGGTAACACTGGAGTACATTGATGAACGCCGGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414:ENSDART00000155502:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATTCGTTTGAGCCGTGC
R:
CATCCAGCCGGCGTTCATC
Band lengths:
234-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]