RnoINT0133910 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64867526-64867980:-
Coord C1 exon
chr10:64867783-64867980
Coord A exon
chr10:64867565-64867782
Coord C2 exon
chr10:64867526-64867564
Length
218 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GCCCTCCCCTCTTGTTCTAGCTT
3' ss Score
10.16
Exon sequences
Seq C1 exon
TGGAACAGTTCAAACCATGTCATGGCCTCAGTGCCCCTGAGAATGGTGCCCGCAGCCCTGAGAAGAGGCTCCACCCAGCAGGGGCCACCATTCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCACATTGGAGTGATCCTCCACCCATCTGTAGGGCTG
Seq A exon
GTAAGTGCTACCACTCCCTGAAACATCCCCCCCATCCCCCTGCCTGTGGCCCCTTCCCGTTCTTTGCTAGTCTCTGATTTAACATCACCAAGACAATGCAGGGGTAGGCTCTCCCTGGTCAAATCCTCCCCATGATCAGCCCACTTCTGTGTTCCCTGCATTGATGGTCTGACCCATTAGGCTCACCCACTGCCCTTGGCCCTCCCCTCTTGTTCTAG
Seq C2 exon
CTTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGTTCAAACCATGTCA
R:
TACGGCCGTTGTAGAACCCAT
Band lengths:
228-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]