MmuINT0142268 @ mm9
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77790246-77790785:+
Coord C1 exon
chr11:77790246-77790443
Coord A exon
chr11:77790444-77790746
Coord C2 exon
chr11:77790747-77790785
Length
303 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GCCCTCCCCTCTTGTTCCAGCCT
3' ss Score
9.02
Exon sequences
Seq C1 exon
TGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCCGGAGAATGGTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTG
Seq A exon
GTAAGTGCTACCTACCACTCCCTTAAACATGTGCCCCCTCCGCTGCTGCTGCCACCACCACAGTCCGGACCCTAGAACTATTCTAGTAAATCAATTCTGTGTTGAGAATTAGAAGCATTGGCCCATGCCCCTTCCCATTCCCTGTCTTTGCTAGTCTCTGATTTAACATCACCAAGACACTGCAGGAGTAGGTTCTCCCTGGTCAAATCCTTCCCATGATCAGTCCACTTCTGTGCTCCTTGCATTGGATAGTTTGGTCCATCAGGCTCACCCACTGCCCTTGGCCCTCCCCTCTTGTTCCAG
Seq C2 exon
CCTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-Sez6:NM_021286:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAATTCAAGCCGTGCC
R:
GCTACGGCCGTTGTAGAACC
Band lengths:
230-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: