DreINT0133611 @ danRer10
Intron Retention
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15092152-15092579:-
Coord C1 exon
chr3:15092388-15092579
Coord A exon
chr3:15092191-15092387
Coord C2 exon
chr3:15092152-15092190
Length
197 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TGTTTTTTTTTTTTTTGCAGTGG
3' ss Score
10.05
Exon sequences
Seq C1 exon
TAAAATATGATCCATGCCCAAACCCGGGTGTGCCAGACAACGGCTACCAGACTCTGTACAAGCACAGTTACCAGGCCGGCGAGACACTGCGCTTCTTCTGCTATGAGGGCTACGAGCTCATTGGGGAAGTGATCATCAACTGTGTCCCAGGACACCCATCTCAGTGGAACAGCCCACCGCCCTTCTGTAAAG
Seq A exon
GTGTGTGGATTAAAACAGAAAACCGAAATTTCACAGGAAGGCAAATCATTTTCACTTCAACTGGATATGCAATAAAAAGGGATTAAAACAGTGTGAAAGTTTTTAAGTAATCCAAGTCTTTTTATACATGTCCACCACTGTAGAGTTGTCATTTCTATCTTAACAATTGACTAAGAATGTTTTTTTTTTTTTTGCAG
Seq C2 exon
TGGCCTATGAAGGACTTCTGGATGATCATAAATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052:ENSDART00000142594:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2),PF146101=DUF4448=PU(21.3=24.6)
A:
NA
C2:
PF146101=DUF4448=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGATCCATGCCCAAACCCG
R:
CCTCCAATTTATGATCATCCAGAAGT
Band lengths:
226-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]