HsaINT0151752 @ hg19
Intron Retention
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:HGNC Symbol;Acc:20662]
Coordinates
chr1:108681680-108686332:-
Coord C1 exon
chr1:108686165-108686332
Coord A exon
chr1:108681831-108686164
Coord C2 exon
chr1:108681680-108681830
Length
4334 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTCTTTATTTCTCTGGCAGCTC
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTTATGAAAACCAGGCTGGCTGTAGGCAAAACTGGGCAGTACTCTGGAATATATGATTGTGCCAAGAAGATTTTGAAACATGAAGGCTTGGGAGCTTTTTACAAAGGCTATGTTCCCAATTTATTAGGTATCATACCTTATGCAGGCATAGATCTTGCTGTGTATGAG
Seq A exon
GTGAGTTTGTAGAAATCTTTTGAATTGGAAAATGCAGTTAGATCTTGTTAGAATTGGACTTTATATGAAGAAGTAGATATATACCAGAAAACAGTGTGTGACCAGAAGTAAATTCAAGCATGTGTTATTTGAACTTTCAAGTAACTTGAGTGTGAATATGCATGGGGTCACTTTTGTATTAGATTTTCTTGGGAATTGCTTTTGTTAATGAAGAGTAGACTCAAAGTTAGGTATAGTTGTTCACCTTAAAAGGTGTTTCTAGAGATTTTTTCCTTTGTTTTGGATTTGCAAAAATCTGACATTAAGCCAAGTGACTAATGTGACTAACATGAGTAATACAGTTTCATTCCTTGTACGGAAGAATACAAATCTTGGATCAACCCTGCAATCTAAATCATTTAATAATTTATGAATCTCACAAACAATTATTGAGCACACACTATACAAACCACTAGGTTAGACACTGGATCTGGGGATTCAAAGGACTCAATGTGTGCCTTGAAGAAACTGAAGGTCTGGTGGGGGAGACAAACGACTAAAACTCAGCGTGGTTATCTGTGCTGCGACAGACATGAGCCAGGGTGCATGTTAGGATGAGACCTAAGCTACAGCGTAGAGGAAGAGTGGAATGTGTAATGAAAAGAAGAGTCGAATTTTTTTTTTAAAGAGCTTTATTGAGATTTAGTTCATATTCCTTACATTTCACTCATTTGAAGTGTACAAGCAAATGGTTTTTGGCTTCTTACATAATTTTTAAAAATTATTATAAAATATAAAATTTGCCATTTTACTAATTTTAAGTGTACAATTCAGTGGCATTAATTACATTCACAATATTGTGCAACCATCAACACTATTTCCAAATCCTTTTCCTCACTCCAAACAGAAACACCTTAACCTTTAAGCAATAACTTCCTACCCTCCGTAACTCAAACCTTTGGTAACCTCTAATCTGCTTTCTATGTCTAGGAATTTACCCATTCAAGATATCTTATAAGTAGAATCATACAGTATTTTTCTTTTTGTGTCTGATTTATTACTCTTAGCATAATGTCTCTAAGGTTTGTTCATGTTGTAGCATGTATCAGAACTTCATTTCTTTTCATGGCTGAGTAATATTCCGTTATGTGTATATACCACATTTTGTTTAGTCCTTCATCTGTTGAAGAGCATTTGGATTATTTCTACTTTTCCAACATTGTGAATAATGCTGCAGTGAACATTGGCATCTGCGTATCTGTTCGAGTCTATGCCTTCAATTCCTTTGGGTATATATCTCAGAATGGAATTGCTGAGCCATATGGTCATTCTGTGTTTAGCTTTTAGGAACTATCAGACTGTTTTCCATAGTGGCTGCACTTACATTCTCACCAGCAACATACAAAGGTTCCAGTTTTTCCACGTCCTTATTAACACTTAATTTCCATTTTAAAAAAGCTTATTTTTATTATGGCCGTCCTCTTAGGTGTGAGGTGGTATGGTTCAGGACTTTACTTCTTGTGCTGAGTTTTTTAAAAAATTGTGATTAAAAACACATAACATAAAGTTTATGATTTTAACCATTTTTAAATATATAGTACAGTAAGTGTTAACTGTTTGTGGTTTGTTGTGCAACAGATCTCTAGAACTTTTTCACTTCTCAAAACTTAAACTCTATAGTCATTAAACAACAGCTCCCAATTTCCCCTTCACCCCAGCGCTGTGTAACCTACTTTCTCGTTTTATGAGTTTGACTACATTAAATACCTTGTATAAGTGAAATCATGTGGTATTTCTCTTTCCGTGACTGGCTTATTTCATGTAACATAGTTTCCTCATGATTCATCCATATGATAGCATACAACAGGACTTTTTTGTTTTTAAGGCTGAATAATAATTTGTTGGGTATATATATCACATTTTCTTTATTCATCTGTTGATGGACATTTGGATTGTTTCTACATCTTGACTATTGTGAATAGTGCTGCAGTGAACATGGTTGTGCAAATATCTCTTCAAGATACTGTTTTCAGTTCTTTTTGACATATACTCAGAAGTGGAATTTCTGGGTCAAATGGTAATTCTATTTTTAAGTTTTTGAGGAACCTCCATGTCATTTTCCATAGTAACTAGACCTTTTTGTTTTTTAACATTTCTATCAATGTACACCAAGATTCCAATTTCTCCATGTCCTCCCCAACACCATTAAGTGGGGTGGTGGTCTACTACTATTGCTGTGTTGCTGTTTATTCCTCCCTTCAGTTCTGTAAGTGTTTGCTTCATATATTTAGGAGCTTAATATTAGGTCCATATGAAGTTATAATTTCTTCCTGGTAAAGTGACCCATTTATCATTATGTAATGTCCATCTTTGTCTCTTGTGACAGTTTGTGTCTTAAAGTCTATTTTGTCTGATGTAATTATGGCCACCCCTTTTCTCTTTGGGTTCCCGTTTTTATGGAATATCTTTTTCCATCCTTTCACTTTCAGCTTATGTGTGTCCTTAGATCTAAAGTGAGTCTCATAGATAAGGTATAGTTGATTCTGTATGTGTTATTCACTCAGCAATTTATATCTTTTAATTAGGGGATTTAATCCATTTACATTTAAAGCAGTTACTGATAGGGAAGGACTTACTGTTGTCATTTGGCTAGCTACCTTTTTATCTTTGTCCTGTGGCTTTTCTGTTTTTCCCTTCCTCTCTTCCTGGCTTCTTCTGTGTTTTGTTGATTTTTTTTTTTTTTTGTAGTGATATGTTCTGATTCCCTTCTCATTTCCCTTTGTGTGCATTCTATAGATGCTATTTTTGTGGTTACCATTGCAACTACATAAAGCATACTAAAGTTATAGCAACTTATTTTAAGCTGTTTACAACTTAACTTCAGTGGTATATAAAACTCTATTTCTTTACATATTTCACCTCCTCCCCACAAACTTTATGTCTTTTGATATTGTATATCCTTAACATAGATTTATAGTTACTTTTTATGCTTTTCTTCTTTAAATTCTGTTTAAATTTTGTTTTTGAAATTTAGATTTTCAAGTTATTTATATACCTTCATTACAATACTATAGGATTTTATAATATTCTAAATATTGACCTTTACCATAGAGTTTCATATTTTGTGGTTTTGTGTTGCTATTTATCATCCTTTTGTTTCTCCTTTTAGCCTTTCTTGTAGGGCCGGTCTAGTGGTGATAAGCTGTATCAGCTTTTGTTTGTCAGGGACAGTCTTAATTTCTCCTTTTTTGAAGGGCAGTTTTGCCCATACAGTATTTTTGTTTGGCAGTTTTTTTAAGTTTCAAAACATAGAATATAACATTCCATTTCCTTCTAACCTGCAAGATTTCCATTGAGAAATGCACTCAATGGATTTTTTAATCCATTGAGATAATTTTTTAATCCTGTAGGATTTAAAATTTTTAGTCTTACAGGATTAAAAAATTAAAAAGTTAAACTTGTTATATAACATATTAACATGTATTTTATACTTAAAGTATCTTATGTTTAAAAAGTTGATTATCATATATATTTTATACAGTTTCTCCTAATTATTGCCTTCTAATGAAATACAGGGACCTAGAGTAACAGGGATAAAGTATGGCCTTTTGATCAGCACGCCTGGTTCTGAGTCCTTCTTAAAAAAACTCTGGGCCTGGTGTGGTGGCTCATGCCTATAATCTCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGATCAGCCTTGCCAGCATGGTGAAACCCTGTCTCTACTAACAGTACAAAGATTAGCTGGGCGTGGTGGTGGGTGCCTGTAATCCAAGCTACTCAGGAGGCTGAGGCAGAAGAATCGTTTGAACCTGGGAGGCAGAGATTGGGCCACTGCACTACAGCCTGGGTGACAAGAGCGAGACTCCATCTCAAAAAAACAAACAAAAACTCCGCTGAGATGAATTTTTCTCATTTCTAAAATCAGAATAATAGATTTATGTAAGAGTTTCTGTAAGGCTCAAATGAAATATATGTAACGTGTAAAATGAGATACAATTAGTAGAATTATATTATTTTATTAATACTCACCATAAGAGGTGTTCTTTAGATCCTGCAGCGTTTGCTGCGCAGTTCACGTTTGTTTAGAAGAATGTCAGTAACCGGTGCAAACCTCATGTGTTCCGCACCCCCAGTGGCCTCCCACCTCTCCACAGAGTCACCGCCTCCTGCAGTGCCTGCTGCTTCTGCAAATGCGTGGCCTCATCCTGCAGAAACGGGGCTTCTCATGAGGTTGAGAATAGCTGTGAAAATGTTTACGTTGAAGTTGTAGAGTTCGTTAATTATTTTCTTCTTTATTTCTCTGGCAG
Seq C2 exon
CTCTTGAAGTCCTATTGGCTGGATAATTTTGCAAAAGATTCTGTAAACCCTGGAGTCATGGTGTTGCTGGGATGCGGTGCCTTATCCAGCACCTGTGGTCAGCTGGCCAGCTACCCATTGGCTTTGGTGAGAACTCGCATGCAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491-SLC25A24:NM_213651:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)