MmuINT0145579 @ mm9
Intron Retention
Gene
ENSMUSG00000040322 | Slc25a24
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Coordinates
chr3:108964135-108966487:+
Coord C1 exon
chr3:108964135-108964302
Coord A exon
chr3:108964303-108966336
Coord C2 exon
chr3:108966337-108966487
Length
2034 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTCTTTGTTTCTGGCGCAGCTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTTGAAAACCCGGCTAGCTGTAGCCAAAACTGGACAATACTCCGGAATATACGGTTGTGCCAAGAAGATTTTGAAACACGAAGGCTTTGGGGCTTTTTACAAAGGCTACATTCCCAATTTACTAGGCATCATTCCTTACGCAGGCATTGATCTCGCTGTGTACGAG
Seq A exon
GTGAGTGAGGGGACAGCAGCACTTCAGTGTGCGGGGTAGGTGGATAGCTGGTTGCCATGGACTCTGACCGTGCCAAGGCCGGGAGAGTGGAGGAGAATGGTTGGGGGCTGGGCTTTCTGTCTGCAGGTGTGTCTTCTGATCCTTTCAGCACCCAGCTCTGTGTCCTCATTTTTATAAAATAATAACTTCATTTTATTTTGAACAGCTTTATTGAGATACAATCCCCATGGCAGGAGTTTCATCCACTTAAAGCAAACAATTTAAAGACTTTTGGACTATCACATTGTTAACTTTTGAAATTATGAGAAAACAGAACTGAAAACTCCCTTTTAACCTATGAAATTCAGTAACATTTAGTATAGTCACTCTAGTGTGCAGCCTTCACTACTGTAAGTTCCCAAAGCGCTTCCTTACCAACCAAAACTATTATGCAATAACTGTCTACCTCGCCTTTCCCTTAACCCCAGAACCTCTAATTTATCCCCAGTCTCTGAGTTTATGTATCTTAGGTGTTTCATCAGTGGAGTTGGACATATTATGTGTGTCTGACTTACCTCACTTAACATAATGCCTTCAAGGTTCATTCATGCCTCATACTCTAGTCTTCTTCCTGGTTCAATAACAAATCCATCATGTAAGACGTGCAATCATGTGCCATATAATAATGTTTGGGCCATGAGAGGCCACTTATATATGACGAGGTTGCTGCAGATTATAATGGAGCTGAAAAATATGTGCTACTTGGTGATGTTTTGGGTGTTTAAACATCAGTAGCTCAAGGCATGGCCCACGTGACTGGGATGATGTTGGTATAAAGACACCGACTCTGAAGCCTGTTGATATTCTGCAACAGTGATAAATGATTGCTGCTGATTCTTTATTCTCTGTATTGAACCTTTCATATGAAATTTATTTTAAAAAGTAGGAACAGAGGAGGCATTCCCAAACGCCTCCTACTAAGCCAGCATCCTTCCAAGATAAAAATCTCGATATTTTAACAATCTGTGTCGAGTCAACTACAATTATATACAAGGCCCCACTCCTTCACACCTCTGGGTACCCCTGTCCTGTTTTGATGACAAGCAGTGTGTCTTTTTACAGTGTGTCCTCTAACATGGGTTTACAATGAGTTCTTGTCCTTTTATTTTTGAAAACTATACTAGATTTCAAAGCTATTTACATACCCGCATTACAATATCATAAGGCTGTCATTTTCTATTTATTCACTTTCACCGTGGACTTTCTGTGTTTTCTGCTGCTGTCTGTTGCCATTTTGTTTGAGACTAAAGGTTGCCTTTTTGTCATCTCTCGCAGGTCTAGTGGTGGCACTTTCTTTCAGCTTTTATTTGTCTGTGGAGCTCTTAATTTCTTCTTTGTATTCAAAAGACAGTTTTGTCTATATACTGTTTGCCAGGGTTTTGTTATTTAAATTTAGCACTTTGAATATAACACCCTGACAACTCCCAACCCACAAGGCTTCTGTTGAGAAATACAACATTATCAAACAAACAAACAAATAAAAAAAACTTAAAATAGTTAAGTTAAAGTAATGGTTATATTTTTAAATTATTGTTCTGATAAGATGCCACAACCGAGGCAACTTATAAGAAAGTGTTTATTTGGGGCTTAACATTTTCAGAGTGTGAGTCCATGACCAGCATGGCAGCAGCCAGGCAGGCAGGCATGGTGCTGGAGCAGTAGCTGAGAGCTCACGTCCTTATCTACAAGTAAGAGTCAGAGAGAGCTAACTAGGAATGGGTGGGTTTGTAAGCCTCAAAGCTCACCTGCAGTGACATTCTTCCTCCCAGACAATTTCACTAACTAGGGGCCAAGATTTCAAACCTGTGAGACTATGGGGGCCATTCTCATTCAATCTACTACAAATATATAATGTCTTAGTATATATTTTTTGTGCTCCAAGTAATTTACTTTTAAAGAGTTGACTGACTACACAAAACAACCCTGGAGATGTTCACATTAACGCAGTGGCTGAATGAGCCATTTTGATGGATTTCTTCTTTGTTTCTGGCGCAG
Seq C2 exon
CTTTTGAAGTCTTATTGGCTGGATAACTTTGCCAAAGACTCGGTCAACCCTGGCGTGATGGTGCTGCTGAGCTGTGGAGCCCTATCCAGCACCTGTGGGCAGCTGGCCAGCTACCCCCTGGCTTTGGTGAGAACTCGCATGCAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040322-Slc25a24:NM_172685:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: