DreINT0149987 @ danRer10
Intron Retention
Gene
ENSDARG00000008568 | slc25a24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:ZFIN;Acc:ZDB-GENE-040912-183]
Coordinates
chr20:34752980-34754515:-
Coord C1 exon
chr20:34754348-34754515
Coord A exon
chr20:34753131-34754347
Coord C2 exon
chr20:34752980-34753130
Length
1217 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TAATTTGACTCTCTCCACAGACC
3' ss Score
10.38
Exon sequences
Seq C1 exon
GTAATGAAGACCAGGCTTACTCTGAGGAAGACTGGTCAGTACTCTGGGATGTTTGACTGTGCCAAAAAGATCCTGAGGAAGGAAGGAGTGAAAGCCTTTTATAAAGGCTATGTGCCCAATATTCTGGGAATTATTCCTTATGCTGGAATAGATTTAGCGGTGTATGAG
Seq A exon
GTGAGCACAAACTGTGGAACACTGTTTAAAATACCTCAATTTTTTTTTGGTAGACTACACATCCAGTTAGGCATGGGCCAGTGTAAGACTCTGACGGTATGATAACCTTGGATAAAAATATCAGTTTCACGGTATTGTAATTACTGCTCTAAAATATATTCTTTTTAAATGTCTGAGTAAAAAACAAAAATATTTTTCCTTTTAAACACAATATATTTAATTTTAAGAAACATTTAAAATATTTTGGAATAGTAAAATTTTCAGGCTAAATCATTCAAATGAATTATTGACTTCTGCTGTCTTTATTAGTTTCAAAAACTTTTTTTTTACAATTTAAAACGGCATCTTTTGATATCTTTTCTGCTGAAGATATTGTTGTCCTAAAAAACAAAAAAAGGTTGTACACATACCTTAGAAAGGGTATTGCAGAACATTTTGCAGTTTTAAAACTTTGACTTTTCCAAACCGCAGTATACCTTGAAAATGGTTATCGTACCATGCCTACATCCAGTGTTTGAATATTTCAGCTTCATTTTTTCAGACCTGTTCTCACCTCTGGGGAATTTTCAAGTTTTTCAGGCTCATGATTTGCTTAAAAACATGTTTTTTAATAACTATTTTCATGATTATGATATTTTCATGATTTGCTTAAAAAATATTTTCTAATAACTAATTTTGTTTATCTTTACTATGATGACTACATAGTATTTTACAACTTCTTTTGGAAGTTTTTTTATTCAGTTTAAAGTGCAATTTAAAGGCTTATCTAGGTTAAATAGGTTAACTCAGCATATTTGGTTAATTAGGCAAGTAATTGGACTACAGTGGTTTGTTCTGCAATTAGTCGAAAAATATATCTCTTTGTATAGGTTGTTAAATTGTGAAAGAAAAATAAATAAATTAAAAATTAAACTTGCTAGAAAAAAATGAAGCATTTCATTCATTTATAGATATAACTTTACTTCGGTTTAGGATTTTGCTTTATTTGAAATACAGAACATTTTAGCCATGTTTTCTATTAGTTTTAATAAATGGGTAACTAGTTTTCCTTTGTGTATTTTTATAAATTCAGATAATCAAGCACAAAAACTGGTAATCCTATTTCAAATAGAAAATCTGCATTGTGTGCCAGATGCATCTGTGCTGGTGTCCTCTTATATGGCAACATGAGTGTTTATTGTAAAGCATGAAGATGTATAATTTGACTCTCTCCACAG
Seq C2 exon
ACCTTGAAGAACACCTGGTTGTCTCACTATGCTAAAGACACTGCTAACCCAGGAGTGCTGGTTCTCCTCGGCTGTGGGACCATTTCCAGCACATGCGGACAGTTGGCCAGTTACCCTCTCGCTCTGATCCGCACACGCATGCAGGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008568:ENSDART00000033325:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGAAGACCAGGCTTACTCTGA
R:
CATGGCCTGCATGCGTGT
Band lengths:
318-1535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]