HsaINT0152499 @ hg19
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:HGNC Symbol;Acc:11019]
Coordinates
chr5:176823951-176825849:+
Coord C1 exon
chr5:176823951-176824075
Coord A exon
chr5:176824076-176824783
Coord C2 exon
chr5:176824784-176825849
Length
708 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CTCTGCCTCATCCCCTGCAGATT
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTCTTGGTGTGATCAGCATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGGCACCACCACCACGGCCATCCTGGCTGCCCTGGCCAGCCCCAGGGAGAAGCTGTCCAGCGCTTTCCAG
Seq A exon
GTGCGCTGGGAGTGTAGCCTCGCCTGGGGCAGGATGGAGCTGCCTCTGGGGTGTGGGGCCTCACAAAGGTGTGACAACATGGAACAAATATTTTGACTGCCTACTAAGGGCCACCTAATATGCTCAATGAAACCATTATGGGCAAAGTAGACCCAATACCACCCTCGAGACCTTAGCATCTAATAGGGAGACACTGCTCATAATTACACCAATAAATAGCAGTGAGTCGGATTTGCACCATAAGGAAGAGGAAGAGGAAGAGGCACTACAAAAGAGGGCCTGGAGCAGTTTGGGGAATCCATTGCGGGGGTCAAGGCCGCAAATGGCAAAGGGGAATTATTCTAGGAGCAAAGGAGTAACTGACAAGCCAAGGCACTGACTGAATGAGGGTCCAGAAACTGACATCAATCCTTTAGCTGCTGGATTTTGGCAGTATCTGCTGGGGGATTCCTGTGCGAGGGGTCAGTGGGGAAAATGTGGGGAGCTCAGGGCAGTAGTTATTTACCAACTGGTCTAGAAGTATTTCAATATTTGCATAGCCAGCATAGCCACCTCGGGGTGATCTCGGGGCAGGGGGCACATCACCCCTAAGTGGAAACTTTCCTGCTGCCCAGACCAGATCGGGGTTCCTATCATCTACCCCTGCTGGCCTGACACAGGACCTGGGAGCCAGTGCCCATCTCAGCCCCTCTGCCTCATCCCCTGCAG
Seq C2 exon
ATTGCCCTCTGTCACTTCTTCTTCAACATCTCGGGTATCCTTCTGTGGTACCCGGTGCCCTGCACACGCCTGCCCATCCGCATGGCCAAGGCGCTGGGGAAACGCACGGCCAAGTACCGCTGGTTTGCCGTCCTCTATCTCCTTGTCTGCTTCCTGCTGCTGCCCTCACTGGTGTTTGGCATCTCCATGGCAGGCTGGCAGGTCATGGTAGGTGTGGGCACGCCCTTCGGGGCCCTGCTGGCCTTCGTGGTGCTCATCAATGTCCTGCAGAGTCGGAGTCCCGGGCACCTGCCCAAGTGGTTACAGACATGGGACTTCCTGCCTCGCTGGATGCACTCCCTGAAGCCCCTGGACCACCTCATCACCCGCGCCACCCTATGCTGTGCCAGGCCTGAGCCCCGCTCACCCCCGCTGCCCCCCAGGGTCTTCCTGGAGGAGCTACCCCCTGCCACACCCTCCCCCCGTCTTGCACTGCCTGCTCACCACAATGCCACCCGCCTCTAGGCTGTGGGCCCAGACTACAGCCTGGAATGGGGAAGGCCTGGGGTGGAAAGGCAGGGGAGGGAGGGTGTGTGTAGGTATGTGCATGTGCCTGTGCCACCCTGGGTGCCAGTCTCTCCTTCTGTAGCTCCGCAAAGCTCTGGGCTTGTGTGAGAGTGTCGGTGTGTGTGCATGTGTGGGGGTGAGTCTGCATGTGCACCTGTCATGTGTAGAAGCTTGTATTTGTGTACAGGTGTGCCAGCCCATGCAGGTGTACACAGACACACCTGTGGGAGGCTGTGTGCAGGCTGCAGGATATCTGGGTATGATTTCAGGTCCTCTGCACGTGTACACATGACTAGGATAGGCAGGAGTAAGGGTGGGTCTGGGTATATGACTGTGCAGCTGTTTGTGCATAGATGTTGGTGCCTGCGTTACTGAATTTGCACACCTCCTTGCCACCTTCCTTCCTCCAAGATACCATCTCCTCATCCTAACCCAGGTCTTCGGCACCACCACAATTAATTCCCTTCCCAACACTTGCCTGATGGAAAAAAAACAAAGGAATTAAAACTCTCCTCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-SLC34A1:NM_003052:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=19.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACACTGGGTTCCAACAT
R:
ATTGATGAGCACCACGAAGGC
Band lengths:
352-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)