GgaINT0016685 @ galGal3
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10216684-10217504:+
Coord C1 exon
chr13:10216684-10216808
Coord A exon
chr13:10216809-10216889
Coord C2 exon
chr13:10216890-10217504
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CACAACTGCCGTCCCCACAGATC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GCTTGGGGGTGATCAGCATTGAGCGTGCCTACCCGCTGACCCTGGGCTCCAACATTGGCACCACCACCACCGCCATCCTGGCCGCGCTGGCCAGCCCCGGGGACAAGCTGGCTAGCTCCTTCCAG
Seq A exon
GTATGGACTGGGGGCTGGGGGGAGACGTGGAGAAGCCAATGTGCCCCCAGGCCCAGCTCGACACAACTGCCGTCCCCACAG
Seq C2 exon
ATCGCCCTCTGCCACTTCTTCTTCAACATCTCTGGCATCCTGCTGTGGTACCCGCTGCCCTTCACCCGCCTGCCCATCCGCATGGCCAAGGCGCTGGGCGAGCGCACGGCCAAGTACCGCTGGTTTGCCGTGCTGTACCTCATCATCTGCTTCCTCCTGCTGCCCTCCCTCATCTTCGGCATCTCCATGGCGGGCTGGCGGGTGCTGGTGGGGGTGGGCGCTCCTTTCCTCGGCCTCCTCTTCTTTGTGGGGCTGGTGAACGTGCTGCAGGCGCGCAGCCCTGGCCGCCTGCCCAAGTGGCTGCAGAGCTGGGACTTCCTCCCGGCCTGGATGCATTCGCTGCAGCCTCTCGACAGCCTCATCACACGCGCCACGCTCTGCTGCACCGACCGCTGCCGCAGCCCCGAGGGCTGGGATGAGCGTGAGGCCGCTGCCCGTGACAAGGCCAGACTGGGGCTGGACAACCCTGTGCTCTCCTACCCTGAGGAGATGCCCAGCCCCGCGCTGCGGGTGGGCTCCCCACACCTGACCCCACACAGCGCCACCCGCCTCTAGCCGGCACCGGGTGCCTGGTTTCCACTTTCCCCAGTGTCTAATAAAAGCTGAGCACCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=24.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGGTGATCAGCATTGAG
R:
CACAGCAGGATGCCAGAGATG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]