HsaINT1041995 @ hg38
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177396950-177398848:+
Coord C1 exon
chr5:177396950-177397074
Coord A exon
chr5:177397075-177397782
Coord C2 exon
chr5:177397783-177398848
Length
708 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CTCTGCCTCATCCCCTGCAGATT
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTCTTGGTGTGATCAGCATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGGCACCACCACCACGGCCATCCTGGCTGCCCTGGCCAGCCCCAGGGAGAAGCTGTCCAGCGCTTTCCAG
Seq A exon
GTGCGCTGGGAGTGTAGCCTCGCCTGGGGCAGGATGGAGCTGCCTCTGGGGTGTGGGGCCTCACAAAGGTGTGACAACATGGAACAAATATTTTGACTGCCTACTAAGGGCCACCTAATATGCTCAATGAAACCATTATGGGCAAAGTAGACCCAATACCACCCTCGAGACCTTAGCATCTAATAGGGAGACACTGCTCATAATTACACCAATAAATAGCAGTGAGTCGGATTTGCACCATAAGGAAGAGGAAGAGGAAGAGGCACTACAAAAGAGGGCCTGGAGCAGTTTGGGGAATCCATTGCGGGGGTCAAGGCCGCAAATGGCAAAGGGGAATTATTCTAGGAGCAAAGGAGTAACTGACAAGCCAAGGCACTGACTGAATGAGGGTCCAGAAACTGACATCAATCCTTTAGCTGCTGGATTTTGGCAGTATCTGCTGGGGGATTCCTGTGCGAGGGGTCAGTGGGGAAAATGTGGGGAGCTCAGGGCAGTAGTTATTTACCAACTGGTCTAGAAGTATTTCAATATTTGCATAGCCAGCATAGCCACCTCGGGGTGATCTCGGGGCAGGGGGCACATCACCCCTAAGTGGAAACTTTCCTGCTGCCCAGACCAGATCGGGGTTCCTATCATCTACCCCTGCTGGCCTGACACAGGACCTGGGAGCCAGTGCCCATCTCAGCCCCTCTGCCTCATCCCCTGCAG
Seq C2 exon
ATTGCCCTCTGTCACTTCTTCTTCAACATCTCGGGTATCCTTCTGTGGTACCCGGTGCCCTGCACACGCCTGCCCATCCGCATGGCCAAGGCGCTGGGGAAACGCACGGCCAAGTACCGCTGGTTTGCCGTCCTCTATCTCCTTGTCTGCTTCCTGCTGCTGCCCTCACTGGTGTTTGGCATCTCCATGGCAGGCTGGCAGGTCATGGTAGGTGTGGGCACGCCCTTCGGGGCCCTGCTGGCCTTCGTGGTGCTCATCAATGTCCTGCAGAGTCGGAGTCCCGGGCACCTGCCCAAGTGGTTACAGACATGGGACTTCCTGCCTCGCTGGATGCACTCCCTGAAGCCCCTGGACCACCTCATCACCCGCGCCACCCTATGCTGTGCCAGGCCTGAGCCCCGCTCACCCCCGCTGCCCCCCAGGGTCTTCCTGGAGGAGCTACCCCCTGCCACACCCTCCCCCCGTCTTGCACTGCCTGCTCACCACAATGCCACCCGCCTCTAGGCTGTGGGCCCAGACTACAGCCTGGAATGGGGAAGGCCTGGGGTGGAAAGGCAGGGGAGGGAGGGTGTGTGTAGGTATGTGCATGTGCCTGTGCCACCCTGGGTGCCAGTCTCTCCTTCTGTAGCTCCGCAAAGCTCTGGGCTTGTGTGAGAGTGTCGGTGTGTGTGCATGTGTGGGGGTGAGTCTGCATGTGCACCTGTCATGTGTAGAAGCTTGTATTTGTGTACAGGTGTGCCAGCCCATGCAGGTGTACACAGACACACCTGTGGGAGGCTGTGTGCAGGCTGCAGGATATCTGGGTATGATTTCAGGTCCTCTGCACGTGTACACATGACTAGGATAGGCAGGAGTAAGGGTGGGTCTGGGTATATGACTGTGCAGCTGTTTGTGCATAGATGTTGGTGCCTGCGTTACTGAATTTGCACACCTCCTTGCCACCTTCCTTCCTCCAAGATACCATCTCCTCATCCTAACCCAGGTCTTCGGCACCACCACAATTAATTCCCTTCCCAACACTTGCCTGATGGAAAAAAAACAAAGGAATTAAAACTCTCCTCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183:ENST00000324417:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=19.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACACTGGGTTCCAACAT
R:
ATTGATGAGCACCACGAAGGC
Band lengths:
352-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains