DreINT0150637 @ danRer10
Intron Retention
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:818225-820807:-
Coord C1 exon
chr14:820683-820807
Coord A exon
chr14:819162-820682
Coord C2 exon
chr14:818225-819161
Length
1521 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GTCTTCATGTCTCCCTCCAGATC
3' ss Score
12.12
Exon sequences
Seq C1 exon
GCATCGGTGTGATCAGTCTGAACCGAGCGTATCCTCTAACTCTGGGCTCCAACATCGGCACCACGACCACCGCCATCCTCGCTGCCCTCGCCAGCCCCAAAGAGAAGCTGCCCGCCGCCTGCCAG
Seq A exon
GTACACACACACACCCTTAAACACACACACACACGTATACACACACATGACAGCACACAGACATACGCATGCACACACAGGCATACACGAGACGCATCCACACTCACACATCACAGCGCACACACATGTACAGACACACAAGCCCCCCCCCCACGCACACACACACACACACACATGCACATACACAACATAGCATACACACACTCACACACATACATATACAGACAAACACATATAAACACATGTACAGACACACAAACTACATAGTGCACACTATCATCTATCTATCTATCTATCTATCCATCTATCCATCTATCCATCTATCCATCCGTCTATCCGTCTATCCATCTGTCTGTCTGTCTATCCATCTGTCTATCCGTCTATCCATCTATCCATCTGTCTATCCGTCTATCCATCTGTCTATCCGTCTATCCATCTATCCATCCGTCTATCCATCTATCCATCCGTCTATCCGTCTATCCATCTATCCATCTGTCTATCCGTCTATCCATCTGTCTGTCTGTCTATCCATCTATCCATCTGTCTATCCGTCTATCCATCTGTCTATCCGTCTATCCATCTATCCTGTCTATCTGTCTATCCATCCGTCTATCCATCTGTCTATCCGTCTATCCATCTATCCATCTGTCTTTCCATCTATCCGTCTATCCATCTATCCATCTATCCATCTATCTATCCATCCGTCTATCCGTCTATCCATCTATCCATCTGTCTATCTGTCTTTCCATCTATCTGTCTATCCATCTGTCTATCCGTCTATCCATCTATCCATCTGTCTATCTGTCTTTCCATCTATCTGTCTATCCATCTATCCATCCGTCTATCCATCTATCCATCTGTCTATCCGTCTATCCATCTATCAATCTATCTATCCATCCGTCTATCTGTCTTTCCATCTATCCATCTATCTATCCATCCGTCTATCCGTCTATCCATCTATCCATCTATCCATCTATCTATCCATCCGTCTATCCGTCTATCCATCTATCCATCTGTCTATCTGTCTTTCCATCTATCTGTCTATCCATCTATCCATCCGTCTATCCATCTATCCATCTGTCTATCTGTCTATCCATCTGTCTATCTGTCTTTCCATCTATCTGTCTATCCATCTGTCTGTCTATCTGTCTATCCATCTGTCTGTCTATCTGTCTATCCATCTGTCTATCTGTCTATCCATCTGTCTATCTGTCTATCCATCTGTCTATCTGTCTATCCATCTGTCTATCCGTCTATCCATCTGTCTGTCTGTCTATCTATCCATCTGTCTATCTGTCTATCTATCCATCTATCCGTCTGTCTGTCCATCTATCATTTGTGTTTGTGCACATTTGGTGAATGAAACTGACTCTAAACAGTTTAATGTCTGAGAAAGTCCAAAATTAAGTCAATTTAAAACAAAAATATTAAGTTAAGAACAGAAATGACTGAATGTAAATAATCAGCAAAAGATAGGCTGACTCCACCCAAACCCACTCTCGTCTTCATGTCTCCCTCCAG
Seq C2 exon
ATCGCGCTGTGTCATTTCTACTTCAACATCTTTGGCATTCTGCTGTGGTACCCGTTCCCGCTGACCCGTCTGCCCATCCGCATGGCCTCAGCTCTGGGCGAGCGCACCGCTAAGTACCGCTGGTTTGCAGTGCTGTACCTGCTGCTGTGTTTTCTGCTGCTGCCGTGTCTGGTGTTCGGCCTCTCTCTGGCCGGTTGGCAGGCTATGGTGGGCGTCGGAGCTCCGTTCGTCGCGCTCACGCTCTTTGTCCTGCTGGTAAACCTGATGCAGGCACGCAGTCCGGCTCATCTGCCTAAAACACTGCGCAGCTGGGACTTTCTGCCGCAGTGGATGCACTCGCTGAAGCCGCTAGACAAGCTGATCTCCAGGAGCACGGCTCTGTGCTGCAGCCCGCTGCGCATCAAGGACCCGGAGCCCCTGGTGGAGCCCTCAGACCTCCAGAAACCGGCCGATCAGTGTTTCGATAACCCTGCGCTAGAGGAGATTCCAGCAGAACCACGAGTGTTCAGACTCAGAGGACTGGAGAGATGCAACAGCACACCGCTGTAGAGATCAACACCAGGGGGCGCACTACAGCAGAGATTAAATTCAATAGGATCTGGATGCAGACTTGATCCAAGCTGAACCTGCATATCTCACACTTGCAATGTCAGACACAATGCACTCAATGAAGCTAGTGACGTCAATGTAAGGGGCGGGGTTAGGGGTGGGGTTAGTTGTACGCTTTAAAAGCATTGCATGCAGCTCACCTTGCTATTGCACCAAGTCTGCATCCAGACCCCTCTTATGAAATCAGCTATGTTATTGAGCCTGTAAGGCTCATTTCTGTATTTATTTCATAATATTTTTAAAAAATACCTGTAACTGTGTTAACTAAAGCAGTATAACTTTTTAAAAGGTAACCTAATGCAATAAAGACATTAGCAGTGACATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824:ENSDART00000148687:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=17.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCCAAAGAGAAGCTG
R:
TGCGCAGTGTTTTAGGCAGAT
Band lengths:
342-1863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]