BtaINT0135279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40251097-40252902:+
Coord C1 exon
chr7:40251097-40251221
Coord A exon
chr7:40251222-40251920
Coord C2 exon
chr7:40251921-40252902
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGCCCTCTCCCCTGCAGATT
3' ss Score
13.16
Exon sequences
Seq C1 exon
GCCTCGGTGTGATCAGCATTGAGCGCGCCTACCCGCTCACACTAGGCTCTAACATTGGTACCACCACCACGGCTATACTGGCTGCCCTGGCCAGCCCCCGGGAGAAGCTGTCCAGTGCTTTCCAG
Seq A exon
GTGAGCTTGGGAGAGGAGCCCTGCCAGAGGGAGGGCAGGGCTAAGACTGGCACCTGAAGCCTGACCCATGTAGACAGTGTGTACCAAACAGTTTTTGACTGCCTAGTAGGGGGCACCTGCTATGCCAGACTCTATGGAAATCATATGGGCAAAGTATATCTGGCGCCACCATCAAGACCTTAGAGTCTAACAAGGGAGACATTGCTGAGAACCCAGAGTCAGACACGACTGAGCGCGCACACATGCCAATCAATGAACAAGAGTCGGTGGGATTCACACTCTAGGGAAGGGGTGCTGTTAGGAGGGGGCCTGGCTCCATCTGGGGGATCAAGGACTGGGGGGCAGACAGCAAAGGGGTTGCTGCTCTAGGAGCAAAGGAGTAACTGGTAAGCCAGGATGTTGCCCACTCAGGAGGCCAGAGCTTCTGAACCAGAAATCAGTATGAATCTTTCAGCTCCTGGATCTGGATGGGATCTGCTGGGGAACTCCTGAGAGAGGGCTTAGTGGGAAGAAATGTGGAGCGTTTAGGGCAGCAGTTATGTACCCACTGGTCCGGAAGTGTACCAGTGTTTCACTGGGGGCGTGCTAGCCCTCAGTGCTGACTTTCCTGCTGCCCAGAGCCGGTGTTCCCGTCATCTAATCCTGACTCAGGAGCTAGGGCCCATGCCCGCCTCCGCCCCTCTGCCCTCTCCCCTGCAG
Seq C2 exon
ATTGCCCTCTGCCACTTCTTCTTCAACATCTCCGGCATCCTGCTGTGGTACCCCATGCCCTGCACGCGCCTGCCTATCCGCATGGCCAAGGCATTGGGCAAACGCACAGCCAAGTATCGCTGGTTCGCTGTCCTCTACCTCCTCCTGTGCTTCCTGCTGCTGCCCTCGATGGTGTTTGGGCTCTCCATGGCAGGCTGGCGGGCTATGGTAGGTGTGGGTGCACCCTTCGGGGCCCTGCTGGCCTTCGTGGTACTTGTCAGCGTGCTGCAGAGTCGCAGCCCCGGGTGCCTGCCAAAGTGGCTGCAGACATGGGACTTCCTGCCCCTATGGATGCACTCCCTGAAGCCCCTGGACCGCCTCATCACCCGTGCCACCCTGTGCTGTGCCAGGGCCGAGCCCCGCTCACCCCCACTGCCCGCCAGGGTCTTCCTGGAGGAACTGCCCCCTGCCACACCCTCCCCCCACCTTGCCATGACCCATCACCACAACGCCACCCGTCTCTAGACTCCAGCCCAGATGGCTGCCTGGAGCCAGAAGGGGCCTGTGTCTGAGATGCCCAGGGTGGAAGGGCAGAGGGGTGCGACTGGGCATGTGCTGGTGCTTGTACAGGTCCTGGGTCTCGGCTTGTGCGGCTGAGAGTCAGTGTATGTGTGCGTGTGGGGGGGGCTGCATGCCAACTGCAAGGTATCTGGGTATGATTGTGAGTCCTTTGCATATGTTTTTGAAAGCCTGCACTTGTGTCCCTGTGTACACACAACTCTGACTAGGCTGGGTGGGAATGAGGGTGAGTCCGTGTACGTGACCTACAGCTGTTTGCTAGGGCACAGATGTGGGTGCCTGAGTCACTGCTTGAATTCTCACCCCCTCCCTGCCACCTTCCTTCCTCCATGATACCATTCTCCTCATCCTCGCCCAGGGTTTCTGCATCTCCACTACAAGCCCCTTCCTAACACTGCCTGATTAAAAAGAAAAGAAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=19.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTCCAGTGCTTTCCAG
R:
ATCCATAGGGGCAGGAAGTCC
Band lengths:
353-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]