MmuINT0146260 @ mm10
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55412248-55414695:+
Coord C1 exon
chr13:55412248-55412372
Coord A exon
chr13:55412373-55413133
Coord C2 exon
chr13:55413134-55414695
Length
761 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TTCTGGCTTCTCTCCTGCAGATT
3' ss Score
11.64
Exon sequences
Seq C1 exon
GCCTGGGTGTGATCAGCATTGAGCGGGCCTACCCTCTCACCCTGGGCTCCAACATTGGCACTACCACTACAGCCATCCTGGCAGCGCTTGCCAGCCCCAGGGAGAAGCTATCCAGCTCATTTCAG
Seq A exon
GTACATGGAGAGATCCGGCCGTCTGTGGTAGTAGAGGGCTAAGATGGAGAGCGCAGAGGATGTAACAATGTTTATAACCAGCATCAACTCACTGGGAACCAGGATGAACAAAGTAGATCTTGGTGTCTAATAGTGAATCACTGCTACATTGTATCAGATAACAGCAGCAAGTCAGGCAGTGTGCTGTCAGAGGCCTAGACTTAGGGGGACTTGTCAAGGTTGCATAGAAGGGAGGGATGGTAAGCAGATGGCAAAGTGGGAAATGATTTAGGAGCAAAACAGCTAGCAAGATGCTGACCAATTAAAGGGCCAGGGTGGGCAACCAAAAAAGAAGAGAAAAAAAAAAGAAAAGAAAAGAAAAAAATATTTAATCTTTAGTGGCTGCTAAAGCCAAGCATGGTAGTACATGCCTGTTATCCCAGCACTTGGTAGGAAAATGGCCAAAAGTCCAAGGTCAGCCTGCAAGGCCAGCCTTGTCTACATAGTAAGAAGATCCTGTGTCAGAAAGACATTTTAGCTGCTGGGTGTCGCTGAGGAGTTAATGGGAGCAGCTAATAAGACACGCGGAAAAGTCCAGGGCAGTTGTCATTGGCCAAGCAGTTCAGCAACACAATATTTTAATAACCAGTCTGGTGTCATCTGGAGCCACATCAGCCTAGAGAGGTTCTCTCCTGCTACCCAGAGCACGTGAGGCCTCTGATATCTACCCCCTGCTGGGCTCACATGGCAGTGCCTGATCACTTCTGGCTTCTCTCCTGCAG
Seq C2 exon
ATTGCCCTCTGCCACTTCTTCTTCAACATCTCGGGCATCCTACTGTGGTACCCGCTGCCCTGCACACGCCTGCCCATACGCATGGCCAAGGCCCTGGGCAAACGCACCGCCAAGTACCGCTGGTTTGCTGTCCTCTACCTGCTCGTGTGCTTCCTGCTCTTGCCCTCGCTGGTGTTTGGCATTTCCATGGCAGGCTGGCAGGCTATGGTCGGAGTGGGCACGCCCTTTGGGGCTCTACTGGCCTTTGTGGTGCTTGTTAATGTCCTGCAGAGCCGAAGTCCCGGGCACCTCCCCAAGTGGCTGCAGACATGGGACTTCCTACCTCGCTGGATGCACTCTTTGCAGCCCCTGGATGGCCTTATCACAAGAGCCACCTTGTGTTATGCCAGGCCCGAGCCCCGTTCACCCCAACTTCCCCCTAGAGTCTTCCTGGAGGAGCTTCCCCCAGCCACGCCCTCCCCCCGCCTGGCACTGCCTGCTCACCACAATGCCACCCGTCTCTAGGCTACAGGCCCCGACTACTGCCTGGAACGAGGAGTGGTATTTTTACAATGCCCACAGTAGAAAGACAGAGCATGTGTGTGTGTGTGCACACATGTGTAGATGCGTGTCACTTGAGGTACATGCTTTTGTGCCACCCTTGGGTACCTGTGCATATTAAGGGCCACAGTGGCATGGGCTTTTGTAATTAAGAGGTAGTGTGCACAAATACATGCTAGGTACTGAGCCTGTGTGACCATTAGTGCGGGTGTAATGTGAGTACACTGTGTGGGTACAGGGGGGTGCAGATGCCTAGGGAGTCTCCAAACTTTTCTGGAAAGAGTCAGCTATACCCTCTCATCTTCTCACAACTCTTGTACCAACAGGAGGGACAGAAGAACAGCTGGCCTTCTGTATACATGGGCCTTACTTCTGCCAATTCTGCTAACTGTGCATAGAAAAAAAAAGTTGAAAGTTGCATCTGTCCTGATCATATATGGGCTTTTTTAAAGAAATCATATTCCTTACCCCTACGGCACAATAATTCTTTACATGGCTTTTATATTGGGTATCTAAATCACCTGGAGGTCACACACCAGGGGATGCAGGTTGATTCTTTGCAAACACTGTCGCTTTATAAAAGAGACTTGAGCACCTGAGGATTTAAGTATTCTGAGGTATCATGGAGCCAAATCTCCAAGCATACAGAGGGACACTCGCCTTTAGTCTGAATCCCACAGACCTTGGCTGGTGTGTGCTGGGGAGGGAGATGCTGAGAGACACTCCGTTGTTCACTGTGAAGCCTACTTGTGTGGAAAGTTCTGTGAGAAAGATTGCTGAAGCCTGAGGTAGAGTTTGAGAATTTGCCACCCCAATATTCCTAATCAGGTGTGGGGTCTCTGGAACCCTGGGAAGGTGCCAGGACCAAAGGCCTCTATATGGCATCTACCACAGGAGTAGGGAACAGGGCCCAGGAGGCCTGGAGGACCACCAGGATTATTTTGTTCTGCAAGAATCTCCCCATAAGCTAGTTTTCTTGTTTGCAACTCCTCACAAATACACAGAGGATACCTCTCAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490:ENSMUST00000057167:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=18.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACTACCACTACAGCCAT
R:
CGGCTCTGCAGGACATTAACA
Band lengths:
345-1106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types