HsaINT0152516 @ hg38
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25669647-25670833:+
Coord C1 exon
chr4:25669647-25669842
Coord A exon
chr4:25669843-25670737
Coord C2 exon
chr4:25670738-25670833
Length
895 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCTGTCTACTGTTTCCACAGCTG
3' ss Score
9.63
Exon sequences
Seq C1 exon
AGCTTTTGCAGGAGCCACTGTCCATGACTTCTTCAACTGGCTGTCCGTGTTGGTGCTCTTGCCCGTGGAGGTGGCCACCCATTACCTCGAGATCATAACCCAGCTTATAGTGGAGAGCTTCCACTTCAAGAATGGAGAAGATGCCCCAGATCTTCTGAAAGTCATCACTAAGCCCTTCACAAAGCTCATTGTCCAG
Seq A exon
GTAACTTAGCTCCTTCAGAGAGAGAAGGAGACTAACTTCCTACCCACAACATCCCCTACCTGAGCTGACAGATATAGAGTGTCTACAACACTATTCTGGGCCTGGCATGGTGGCTCACCCTTGTTTTCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATTGCTTGAGGTCAGGAATCTGAGACCAGCCTGGCCAACATGGCATAACCCTGTCTATACTAAAATGCAAAACATTAGCTGGGCATGGTGGCGTGCACCTGTAGTCCCAGCTATGTGGGGGCTGAGAAAGGAGGATCGCTTGAACCCCGGGAGGTCAAGGCTGCAGTGAGCTGAGAATTGTGCCATTGCACTCCAGCCTGGGTGACAAAGTGAGACTGTTTTTAAAAAATAAATAGATGAATAAACACTACTCTGTAGCTGCCTCTGGAAAAGGCCAAGGGAGGCAGAACTTTTGGGCCACCTGATAGAGTGACTGACCTTGATGGTTACTTTGACTTCCATAACATGCCACCTTTATTGGGGTGGAGGTGCTTCTTAAGACTGGACACTTGAGACCACTTTGTTCCCACTGCTGTCCTCAACACCAGTGGACTTGATAAAGTATGATCTACCCTTTCCTGCCTAGAGTCATCTCAGCCCCTTCTCCCTGGGTCCTTGCTAGGACCTTGTGTTTTCACTCTTACTGGTTTTCTTGGCCATTCAGTCATCCAGAAAATATCTACTGTCTGCTCCCTAGATATCAGTGCCTCTGCAGATAGAGTGAGTCCCACTTTGCCTCTCTGGGGGCTCACAGTCACATTTATCTCCTTAGAGCCCCTCTCACTTCAACCCCCTGGGTTTGTGTCCTAAATCGGTTCTGAGGATATGCTGATGGTTTCCTGTCTACTGTTTCCACAG
Seq C2 exon
CTGGATAAAAAAGTTATCAGCCAAATTGCAATGAACGATGAAAAAGCGAAAAACAAGAGTCTTGTCAAGATTTGGTGCAAAACTTTTACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765:ENST00000382051:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCAGGAGCCACTGTCC
R:
TGTTGGTAAAAGTTTTGCACCA
Band lengths:
288-1183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains