DreINT0150679 @ danRer10
Intron Retention
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1072038-1073872:+
Coord C1 exon
chr23:1072038-1072233
Coord A exon
chr23:1072234-1073776
Coord C2 exon
chr23:1073777-1073872
Length
1543 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTTTGTCTTTGCTCTTCCAGCTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGCTTTTGCGGGGGCGACGGTGCATGACTTCTTCAACTGGCTGTCGGTGCTGGTGCTCCTGCCTCTGGAAGTGGCCTCAGGGATGCTCTACAGACTCACCAAACTTGTGATCGATTCCTTCAACATCCAGACGGGCGCAGACGCTCCAGACCTGCTGAAAGTCATCACAGAGCCGCTCACCAAGAACATCATTGAG
Seq A exon
GTGAGGTCAACCCCTGCGCGGTAATGACAGATCTCTGGCTTCTCTGAGTAGCTGCTGCTAGAACATAAACGGTTGAAGTCTAAATTATTTGCCTTCCCGTGAATTTTTTTTTCTGTCAAATATTTCCCAAATTATGTTTATCAGATTCTAAAATTTCTCACAGTATTTCCTATAATATTTTTTTTCTTCTGGAGAAAGTCTTATTTTATTTTGGCTAGAATAAAAGCAGTTTTTAATAGTTTTAAACCAATTTTAAGGTCCATATTATTACCCCCCCCCCTTAAGCCGTATTTGTTTTGGATTGTCTACAGAACAAATTCAGGGGGGCTAATAATTCTGACTTCAACTGTGTGTGATTTGCATCATACATGCTTATCAGAGTCTCGTCTCCCATTCCCTGTAAGAGTCGGTTGCCTCGCTCCATGACACATTTGCTATTTACTGGCGACTCTTAAGTGTAAAAACTGAACACTTCACTAGCAGGAAAACGGTTAAACAGAGCATCTGCAGTGCAAGAATGAGAGAATGAACCTCCTCATTCAGCCTATTACTCTCCCTTTCGTAGATGGCAAAAAGTGTTGTTTGCACAGACGTCCATTAGCCTACATAATTTCCTTCTAGTGCAAAGATTTGTTTCAAAATTCTTTCTAAATTCGGTTTTAATTTCCAGCAAAGGAATAAATTAACCATAATTAAGAAGTGTGGTCAAAATTATATAGTTCGATCCGAACACGCATGCTATGCCCCATATGGTCCAAAACCTGACAGGTGGACAAATCTTAGCTACATTCTGCGTGTATTAAGCAATGTGTAAGCGAGGTGCACAACTGACAGGATCTGAGCTGGATTTTAGACCTGCTTTCAGTCGATCTATTGCACAGTCTATTTTAGTTCCTCAAAATAGCAACGCAGTGGCGCAGTGGGTAGCACGTTCGCCTCACACCAATAAGGTCGCTGGTTCGATCCTCTGCTTAGTTGGCATTCCTGTGTGGAGTTTGCATGTTCTCCCTGTGTTCGCGTGGGTTTCCTCCAGGTGCTCCCCAACAGTCCAAAGACATGCAGTACAGGTGAATTGGGTAAGATAAATTGTCCGTAGTGTATGAGTGTGAGTGTATGTGTGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGCGACCCCAGATTAATAAAGGGACTAAGCTGACAAGAAAATGAATGAAAATAGCAACGCGCCAACAATGCGCCTTAACACACCTCTTTTCTAGACCAAAACATCCTTGAGTCCACAAAGCAGCGCAAATGGATTTGCTATTTAAACAACATGGCAGGAAACGTGAAAATTGCTGTTGCGTTGGTCTGAAAATAGCAACACATTGTGGAAACACGTCTTGCGCCTTATTGCACCAGGTGTATCATAGGGGCTTTGTGTCTAGATCGTTAGAATAGAGCCGCATGTGTGTAGTGATGTTAATGAATTTTCTACTTGATGACTGTATTTACTGAACACCGTTTGTCTTTGCTCTTCCAG
Seq C2 exon
CTGGACACCTCTGTGATTCGTGACATCGCCACTGGAGACCCTGCTGCCCGAAACAAAAGTTTGATCAAGATCTGGTGTAAAACGGAAAAAATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864:ENSDART00000053527:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGGTGCATGACTTCTTCA
R:
TTTCCGTTTTACACCAGATCTTGA
Band lengths:
270-1813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]