MmuINT0146278 @ mm10
Intron Retention
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53063849-53064894:+
Coord C1 exon
chr5:53063849-53064044
Coord A exon
chr5:53064045-53064798
Coord C2 exon
chr5:53064799-53064894
Length
754 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCCTCTATTTTTCCCCTCAGCTG
3' ss Score
9.9
Exon sequences
Seq C1 exon
GGCATTTGCAGGAGCCACTGTTCATGACTTCTTCAACTGGCTCTCTGTGTTCGTGCTCTTGCCTCTGGAGGCTGCCACCCATTACCTGGAGATCCTGACCAACCTTGTGTTAGAAACCTTCAAGTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATCACAGACCCCTTCACAAAGCTCATCATCCAG
Seq A exon
GTAATGGCTATGTTAGTACAGCTCACATCTCAATGAGCCTAAAGAGGCCAGGGAGCAGGACATAAGCCATAGGAGGCAGAAGTTAAGGATATTTGTGTCACTTGTATTTCTTTAACATAGGCTGGTTTACCCTATTAGGAGTGGGGGATAATTGGGTGAGGTTAGGGGTACTTCTGAGAGATAATCAGTGAGCATTTGTGCCCGCATATTTTCCATTGTCATAACAGTTTATTGATGGTTACTCCCCTTTCCCAGCTGAGGTCATTCATGCCTGCTGATCCTTGGTGTCTGTCCTAGATGTGAACAGAAAGGGCCAGCCAGGACTTGAACTTAAACTGTAGGTCTCTACAACCTGCTGGCTATCAGTACCCTTACAGTTTTGCTCTGAGTGTCTGCCAGTTTCTAGGGCAGTGATTCTCAACCTTCCTAATGCTGTGACCCTTTATTACACTTCCTCATGTGGTGATGACCCCCAATCATAAGATTATTGTTGCTATTTCATAACTGTAATTTTGCTACTATTATGAATCTGAATGTAAATATCTGTTTCCGGTGCTTGTGAAAGGTGTTGAGAACCATAGGTTGAAAGCCACCAGCTCTAGAAGATAATGCTGTTCTTGGTGGGAGGGTATAGATCTTTACATATAGGGTGTGTCCAGTGGCTCACATTCACAGCACCCAAAATATCCAAGGCCCGCTGACAGCAACCACTCTGAGGATTTTCTGACCCGTGCTCCTCTATTTTTCCCCTCAG
Seq C2 exon
CTGGATAAAAAGGTCATCCAACAAATCGCAATGGGTGACTCAGCGGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAAGTATAACCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188:ENSMUST00000094787:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGGAGCCACTGTTCATG
R:
CACATTGGTTATACTTTTACACCAGA
Band lengths:
287-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types