RnoINT0137618 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60262392-60263431:-
Coord C1 exon
chr14:60263236-60263431
Coord A exon
chr14:60262488-60263235
Coord C2 exon
chr14:60262392-60262487
Length
748 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TACCTCCTTGTTCCCCTCAGCTG
3' ss Score
8.09
Exon sequences
Seq C1 exon
GGCATTTGCAGGAGCTACTGTCCATGACTTCTTCAACTGGCTCTCTGTGTTGGTGCTCTTACCTCTGGAGGCTGCCACCCATTACCTGGAGAAACTGACCAACCTTGTGTTGGAAACCTTCAGCTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATAACAGACCCCTTCACAAAGCTCATCATCCAG
Seq A exon
GTAATGGCTGTTCGTACAGCTCACCTCTCTGAGCCTAAAGAGGCCGGGGAGCAGGACATAAGCCATAGGAGGCAGAGGTTAGGGGTATCTGTGTCACCTGTTTTCTTTGACATAGCCTGGTTTGCCCTATTAGGAATGGGGGCTAATTGGGTGTGGTTAGTGAGCATTTGTGAATATATTTTCCATTTTATTGGTGGTTACCCACCTTTCCCAGCTGAGCCCAGTCATGCCTTCTGATCCTTGGTGTCTGTCCTAGATACGGGTGGAAAGGGCCAGCCAGGACTTGAACAGTAGGTCTCTACGACCTGCTGATTATTAGCACCCTTGCCATACAGTCATGCTCTGAATGTCTGCCAGTTTCCAGGGCAGTGGTTCTCAAACTTCCTAATGCTGTCACCGTTTAATACACTTTCTCGTGTTGTGGTGACCCCCAATCATAAAATTATTTTCATTGCTACTTCATAACTGTAATTTTCTGTTTTGAATCATAATGTAAATATCTGATATTCCTGATGGCCTTGGGTGAACCTTGTGAAAGGTGCTGAGAACCATAGGTTGAGAGCCACCAGCTCTCAACAGGATAATACTGTTCTCAGCAGGAGGTTGGAGGGTAGGGAAGGGTATATGTCATTACATATAGGGCTTTATTATACCAGTGGGCTCACAGGTCCCCTATCAGCAGTAATCACTTTGTCAGGCATCACTTCTGAGGATATGCTGACCCACCCTACCTCCTTGTTCCCCTCAG
Seq C2 exon
CTGGATAAAAAAGTCATCCAACAAATTGCAATGGGTGACTCAGAAGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAACTATAAGCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTTGCAGGAGCTACTGT
R:
CACATTGCTTATAGTTTTACACCAGA
Band lengths:
292-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]