HsaINT0152520 @ hg19
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:HGNC Symbol;Acc:11020]
Coordinates
chr4:25664120-25664464:+
Coord C1 exon
chr4:25664120-25664234
Coord A exon
chr4:25664235-25664326
Coord C2 exon
chr4:25664327-25664464
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACCCCTTTTGCTTGTTTCAGCAG
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACCATGGCTCCCTGGCCTGAATTGGGAGATGCCCAGCCCAACCCCGATAAGTACCTCGAAGGGGCCGCAGGTCAGCAGCCCACTGCCCCTGATAAAAGCAAAGAGACCAACAAAA
Seq A exon
GTAAGTGTCGCTCGTTTGTCTGCAGATCGGCCTTTGTGAGGACCCCAGGAGACTCAGGTCTGATTCCTCATTACCCCTTTTGCTTGTTTCAG
Seq C2 exon
CAGATAACACTGAGGCACCTGTAACCAAGATTGAACTTCTGCCGTCCTACTCCACGGCTACACTGATAGATGAGCCCACTGAGGTGGATGACCCCTGGAACCTACCCACTCTTCAGGACTCGGGGATCAAGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-SLC34A2:NM_006424:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077877=DUF1625=PU(1.4=2.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCCTGAATTGGGAGATG
R:
AGTGTAGCCGTGGAGTAGGAC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)