GgaINT0072506 @ galGal3
Intron Retention
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75896104-75896454:-
Coord C1 exon
chr4:75896340-75896454
Coord A exon
chr4:75896239-75896339
Coord C2 exon
chr4:75896104-75896238
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTAATGTTCTGTTTCATCAGGCA
3' ss Score
7.85
Exon sequences
Seq C1 exon
TCACAGATCATGGCTCCTTGGCCTGAGGTAGACAAGCCTGAAACCAATAACTATATTGGTGATTCCTCCAAACAAAACCAGAACATGGCTGGAAAAGAAGGAGAAAATCACAAAG
Seq A exon
GTAATGTGTGTTGACCTGCAGGTTACAGAAATATGTATGTTTGAGGCTCCTTGGAGAAGAGATAAAGTCATTAAAACATTTTTAATGTTCTGTTTCATCAG
Seq C2 exon
GCAACGTGGCTTCACTTGGAAACAAAGTGGAAATTCAACCTGCATTTTCCACAATAGCGTTGATAGATGAGACAAGGCAAGAAGAGGACCCATGGGCTCTGCCAGAACTGCAGGACACTGGAGTCAAGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372:ENSGALT00000023222:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGATCATGGCTCCTTGGC
R:
CACTTGACTCCAGTGTCCTGC
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]