RnoINT0137613 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60268539-60268880:-
Coord C1 exon
chr14:60268766-60268880
Coord A exon
chr14:60268677-60268765
Coord C2 exon
chr14:60268539-60268676
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCCTTTGCTACTTGTTTCAGCAA
3' ss Score
7
Exon sequences
Seq C1 exon
ACCATGGCTCCTTGGCCCGAGTTGGAAAATGCCCACCCCAACCCCAATAAATTCATCGAAGGGGCCTCAGGTCCACAGTCTAGCATACCAGACAAAGACAAGGGGACCAGCAAAA
Seq A exon
GTAAGTGTTCACCAATTGGGGACAACCACCTTTGAGGACCCATGGAAATTCAGCTCCCCATTTCTCATGGCCTTTGCTACTTGTTTCAG
Seq C2 exon
CAAATGACAGCGGGACTCCTGTAGCCAAGATTGAACTTCTACCCTCATATTCCGCCCTGGTTCTCATAGAGGAGCCCCCTGAGGGGAACGACCCCTGGGACCTGCCTGAACTCCAAGACAATGGGATCAAATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.234
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCCCGAGTTGGAAAAT
R:
CTCTATGAGAACCAGGGCGGA
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]