BtaINT0135294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46735639-46735991:+
Coord C1 exon
chr6:46735639-46735753
Coord A exon
chr6:46735754-46735856
Coord C2 exon
chr6:46735857-46735991
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTCTGCTTGTTTGGGCAGATG
3' ss Score
9.07
Exon sequences
Seq C1 exon
ACCATGGCTCCTTGGCCTGAGTTGGAAAATAGCCAGCCTACCTCAGAGAAATACACTGTAAAGGCCGATGGTGAGCAGTCTGCCAAGCCTGAGAAAGCTAAGGAGACTGAAAAAG
Seq A exon
GTAAGAGCCCCACCTCCAGCCCTGGGCTGGCCCCCTTGGGAAGGCCCCAGGAGACCCAGGCCTGGTTCCTCATTCCTCACGGCCTCTCTGCTTGTTTGGGCAG
Seq C2 exon
ATGACACCGGTACCCCTATCACCAAGATAGAACTTGTGCCGTCTCATTCCACTGCGACACTGATTGAGGAGCCCACCGAAGTGGAAGACCCCTGGGACCTGCCCGAGCTTAAGGACACGGGGCTCAAGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545:ENSBTAT00000002023:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTGGCCTGAGTTGGAAA
R:
CTGACCACTTGAGCCCCGT
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]