DreINT0150674 @ danRer10
Intron Retention
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1068955-1069254:+
Coord C1 exon
chr23:1068955-1069007
Coord A exon
chr23:1069008-1069110
Coord C2 exon
chr23:1069111-1069254
Length
103 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
3' ss Seq
AATCTCTGGTTCTCCTCCAGGAG
3' ss Score
9.23
Exon sequences
Seq C1 exon
GCTGATGGCTCCTCTGGCTGAGACTCATCCCGCCTCGCCGCCACCGGAACTCG
Seq A exon
GTAGGATCTGCTATAAATCCGCGTCTGCTCAGAGGCGCACTTCCTTCCGCCTGTGCGCTTCTGTTGAGCTGCGTGTCAGTCTGAATCTCTGGTTCTCCTCCAG
Seq C2 exon
GAGCGGACGCGGACAAACATGAGCCCCAAACCCCGACGCGCACCCTCAGTCCCTGGCCCGCGCAGCAGTGGGAGCCGGAGCAGGAGGAAGAGGTGGACCCGTGGGAGCTGCCGGAGCTCCTGGACACCGGGGTGAAGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864:ENSDART00000053527:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTCCTCTGGCTGAGA
R:
CTGACCACTTCACCCCGGT
Band lengths:
194-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]