MmuINT0146273 @ mm10
Intron Retention
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53058153-53058498:+
Coord C1 exon
chr5:53058153-53058267
Coord A exon
chr5:53058268-53058360
Coord C2 exon
chr5:53058361-53058498
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
TCTTTGCTACTTGTTTCCAGCAA
3' ss Score
6.37
Exon sequences
Seq C1 exon
ATCATGGCTCCTTGGCCCGAGTTGGAAAATGCCCAGCCCAACCCCGGTAAATTCATCGAGGGGGCCTCTGGACCACAATCGAGCATACCTGCCAAAGACAAGGAGGCCAGCAAAA
Seq A exon
GTAGGTGCCGGTCACCAACTGGGGACAAGCCCTCTTTGAGGACCCATGGAAATTTGGCTTCCATTTCTCATGGTCTTTGCTACTTGTTTCCAG
Seq C2 exon
CAAATGACAACGGGACTCCTGTAGCCAAGACTGAACTGCTACCCTCCTATTCCGCCCTGGTTCTCATAGAGGAGCATCCCGAGGGGACGGACCCCTGGGACCTGCCTGAACTCCAGGACACTGGGATCAAATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188:ENSMUST00000094787:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCCCGAGTTGGAAAAT
R:
CTCTATGAGAACCAGGGCGGA
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types