HsaINT0152525 @ hg38
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137234607-137236554:+
Coord C1 exon
chr9:137234607-137234731
Coord A exon
chr9:137234732-137235951
Coord C2 exon
chr9:137235952-137236554
Length
1220 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GACAGCCCCCTCGCCCCCAGGTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GGGTCGGGGTGATCAGTCTGGACCGGGCGTACCCCCTCTTACTGGGCTCCAACATCGGCACCACTACCACAGCCCTGCTGGCTGCCCTGGCCAGCCCCGCAGACAGGATGCTCAGCGCCCTGCAG
Seq A exon
GTACTGTCCACCCTGCCCCGCTGCCAGAACTGGCCAGCTTCCTCTCAGCCCCACAGACAGGAGTGTGTCACCAGCCCCGGGGCCCTAGGCTGGCTGTGCCCCCGCCTTCCTGGACCCCTTCCCTGGCCGCCAGCCTCAGCCCTGCTGCTCTGCCTCCTTGGACCCCACAGGTCCTGCACACATTTCACACCCTCCCTGCGTCTCCTCCCTTGAGACCTCCTCACTTCCACATTTTCTCAGCTCTTTGCTGTGTCCCTGGGGGCCTGCCCCCAGCATCTCAGGGGGCTCTAAGCCCCTCTATTCCAGCACCCTCAGATGCTTTCCCCCAACCCCTGCTCCCTCAAGGAGCAGCCACTCACCTCCAGCAGGTCCCCATCTGGACGACCCTCCCAGCCCCCATTCCACATCTGCAAAGGCCGAGTCCCACCGATGCTGGGCCCTGCCCTGCCGCTGCCAGGGCTGTGATTCTGCCTCCAGGACACTTCCCCCAGTCTGAGCCCCCAGCTCTGTGCCCCAACCCCAGTCTCATTTAGTCCAGCTGGTTCTCCCTCTAAAACAGCCCGTCTGCGGCCTGCTGCCCGGAGGCCCAACAGGTTCAGCTCCCGAAACTCCGGGTCATGCTGCACCGCCGCTGACAGGAAGAGACAAGTGCGGCACCCCCTGGAACCCACGCTCGTTCTTCTTGCCTCTGCCCTGTCTCTATCCACTTAGACCCTCCCAGTGCAGGGTCCTGCTCCACCCCCTGCAGGAAGCCCTCCAGACTGCACCTGTGTGTGGACTCCTCCAAGTCCGGCAGCCCCTGGAGGGGCCCGTGACACTGTTCTCCCCTCCTGTGGCCCTGTGCCTCCTCCCCGCAGGGCCTGGACTGTGCAGGCTCAGCACACTGGGGACTGAGGAGACGGGGTCTCTTGGCAGGAGGCACAGGCAGAGCCAGGTCGGAAGGTGCTTCCCCCGCAGGTCCCCCTTGAGGGCAGCAGTGATGCAGTCAGTGCTCGGGGGTGCTGGGCTGGACTGCAGCTCCCAGGAGCGTGCGGGAGGCGTGCTGGGGAACATGTCCACATCTGGCCACAGCCCGCCTCCCAGACGGCCATCTCATCCGTGAAGCAGGATGAACTTCAGACTTGGCGCTCCTTCTGTAGGGTGGAGGAGGGCAGGGGTCCGGGGCCCCTGGTGACCCCACCTCGTTGGGCCCAGGCCCCTGACAGCCCCCTCGCCCCCAG
Seq C2 exon
GTCGCCCTCATCCACTTCTTCTTCAACCTGGCCGGCATCCTGCTGTGGTACCTGGTGCCTGCACTGCGGCTGCCCATCCCGCTGGCCAGGCACTTCGGGGTGGTGACCGCCCGTTACCGCTGGGTGGCTGGGGTCTACCTGCTGCTCGGATTCCTGCTGCTGCCCCTGGCGGCCTTCGGGCTCTCCCTGGCAGGGGGCATGGAGCTGGCCGCTGTCGGGGGTCCCCTGGTGGGGCTGGTGCTCCTCGTCATCCTGGTTACTGTCCTGCAGCGGCGCCGGCCGGCCTGGCTGCCTGTCCGCCTGCGCTCCTGGGCCTGGCTCCCCGTCTGGCTCCATTCTCTGGAGCCCTGGGACCGCCTGGTGACCCGCTGCTGCCCCTGCAACGTCTGCAGCCCCCCGAAGGCCACCACCAAAGAGGCCTACTGCTACGAGAACCCTGAGATCTTGGCCTCCCAGCAGTTGTGACGGGCAGTTGCTGAGCAGACCGCCCCACCCTCCCCGGCTGGGAGGGCTCTGGAGGGCCCTGGAGGGGGGGTCCCCGCGGCAGCTGACCTCCGGTCACCTGCTTCCCCTTCTGTGCAAATAAACCAGGCTGTTATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569:ENST00000361134:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACTGGGCTCCAACATCGG
R:
TAACCAGGATGACGAGGAGCA
Band lengths:
347-1567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains