HsaINT0163614 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160076203-160080875:+
Coord C1 exon
chr2:160076203-160076378
Coord A exon
chr2:160076379-160080742
Coord C2 exon
chr2:160080743-160080875
Length
4364 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GGCTTCTGCTGTCTCTGCAGGTG
3' ss Score
11
Exon sequences
Seq C1 exon
GTGCAGCCCTTTCTTCTCTAGACAAAGAGGGTCTGTCAGCATTAAGCTGGGCTTGTCTGAAAGGTCACAGGGCAGTGGTCCAGTATCTGGTTGAAGAAGGAGCTGCAATAGACCAGACAGACAAGAATGGCCGCACACCCTTGGACCTGGCTGCCTTCTATGGCGATGCCGAGACT
Seq A exon
GTGAGTACCAGCAGGTGTTCCCCACCTCCACCTGCATTGGAAAGAAACCCCAGGAAGTGAACAGCTCAATCCAGGGCCTGCATGAGGTTGTGTCTCAGTGTCATCAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGTCAGGGATCTTTCATTTTTCTCTAATTCTGTGACATGCAGTCTATTCCAGGACTTAAGATTTTAGTCGACTCTTAAAAGCTTAAAAATACCTGCTTGCAAATAGCACATACAACAGACACATACGTGAATATGCATACACATGTGCATATGTGATTTTCTCAGTCATCCATATAAATAAAACTTTTGCATAGATCATTTAGAAACTACTTTTATATATGGTAAGTGACTAATCAAATGACTACCTGGTTGCTTTTTTTTTTTAAGTTGTTTTGTTTTTAATTTATTAATTTTTTTTTCCCAAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACTTCCGCCTCCTGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCATGCCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCCCTGCACCTGGCTTATTATTAATTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATGACTGCAGCCTTGTTCTCCTGGTCTCAAGAGGTCCTCCCACCTCAGCCCCCTGAGTAGCTGGGAATACAGGCATGCACCACCGTACCTGGCTAATTTTTAGAGACACGGTTTTTCACCATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCACCCCACCTTGGCTTCTGAAAATGGTAGGATTACAGGCATGAGCCACCATGCCCGGACAAAGTTTTATTTTTAATTGACAAATGATTGTGTATATTTATGGGGTACAGTGATGTTTTGATACTTGTACACATTGTGGAATGATCAAATCAGGCTAATTCATGTATCCATCACCCAAATAGTATTTCTTTTTGGTGAGAGCATTTGAGATCTCTTTTAGCTATTTTGAAATAAAGAATACATTACTGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCGGCACTTTGGGAGGCCAAGATGGGCAGATCACTTGAGGTCAGGAGTTCGAGATTAAGCGAACTTGAGGTCAGGAGTTCGAGATCAAGTGAACTAGTAGATACTATTTTAGTATCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCAGAAGGGTGAGGCACGAGAATCACTTGAACCCGGGAGGTGGAGGCTGCAGTGAGCCAAGATCATACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCAGTCTCAAAAAAATAATAAATAAAAGTTATTAATTCTAGTTGCAGTACTGTGCAGTAGATACCAGAAGTTACTCCTCCTGTCTAACTGAATCTTCGTACCCTTTGACCGGTGCCTACCCTTTCCGCAGGTCCCCCTGTCTCCCAGCCTCTTTCTGTTCTCTGCTTCTGTTGTGAGTTCAACTTGTTTAGATTCCACATATAAGTGAGATCATGCTGTCTTTCCGTGCCTGGCTTATTTCACTTAGCCATAATGTCCTTCAGCTTCATCCATGTTGTGGCTAATGACAGGATTTCCTTATTTTAAAGCCTGCATAGTATTTCATCATGTACATATACTGGTTGTTTTTAAAGTGATATGGCATTGCCTAAAAATAATATGGAAAGCTTTGGGCACTATCTTTATCTCTTTGCCAAATGCCCATGTCTAATCGAGGTTTGAGGGAATAAAACCTTGATAAACTGAGAACCGTGAAATGTCTTTCAGGGCAGAAACTGATTTTATCAGGCTCCATGTCCCAGGCACCCAGCAGGTGCCAGAGAAATGGTCAGCTACATGAGAGTTACCAGTTTCCAATAATTCAATACATCTAATGGAAGGACTAGCTGGAGAGACAGATGCTTGCAAACCTGGCAGTGGAAGCCATGGCCCTGTACCTCTGTGCCTTGGTGCTTTTAGAAGGCAGCGCTGTCAGAGTTCAATGGTATAAACTTCAGTACCTTGTAAACTCTACTTCATGTCAGTTTTCAAAAACATACTCAACTAAATCTCACATGTCTACACTTATTTTTCAGCTACCTTCCCACATTGTGTAGTTTATCAAAATTAGAGAAGAGTGAAGGAGCTTAGCATTCCAACATAATTTTTTTAATACCGTGGCAAAAACACATAGCATAAAATTTACCCTTAATCATTTCTAAACATATAGAGTTCAGTAGTTTAAGTATATTCACATTGTTGTACAACCAGTATCCAGAACTTTTCATCTTGCAAAGGTGAAACTGTATTTGTTAAACAACTCTCCATCTCCCCCAGCCCATCACAGCCACCACTCTACTTTGTGAGTTTTTTTACCCCTTTAGATATCTCATGTAAGTAGAATCATATAGTATTTGTCTCATTGTGACTGGCTTATTTCACATAGCATAATGTTCTCCAGGTTCACCCATGTTGTAGCGTGTGTTAGAATAGCATTTCCTTCCTTTGTAAGGATGAATATTGCTCCATTGTACGTATACACCACATCTCGTTTATCCAGTCATCTGTCAGTGGACACTTAGGTTGCTTCTATGTTTTTTGCTGTTGTGAATAATGTTGCAATGAATGTGGGTGTCCAAGTATTTATTCAAGACCCTGTTTTCAGTTCTTTGGGGTATATATCCAGAAGCAGAATTTCTGGCTCATATAGTGATTGTATTTTTAATTTTTTGAGGAACTGCCCTACTTTTTTTCCACAGTTGCTGCACCATTTTACATTCATAGCACAGTGCATAAGGGCTCCAGAATTGTTCCACATCGTCACCAATACTTGTTTTTTGTTTTTGTTTTTTTGAGTTGGAGTCCCACTCTGTCACCCAGGCTGAAGTGCAGTGGTAGAATTTCAACTCACTGCAACCTCCGCCTCCTTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACACCCAGCTTATTTTTGTATTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCACGCCCAGCCAGTACTTGTGGAAGGACTAGCTGGACAGACAGGTGCTTGCAGACCTGGCAGTGGAAGCCATGGCCCTGCATGTCTGAGGTGCTTTTTTTAATAGTAGCTTTTTTTTTTTAATTGTAGCCATCGTAATGGGTATAAGGTGAACATCTTCTCATATGCTTGTTGAGCACTTGTTGATCATTTTTGTAGAAATCTATTCCAGTCCTTTGCCCATTCTAAAGATGAGGTTATTTGGTTTTTGTAGTTGGGTTGTAGTTCTTTGTGTAGATAATCCCTCTAGTTAGTGTCATTTTGAATAATGGGGTGGATGATAGGAAGCATATATTTTTAGATTCACATGAAAATCTAAAATAGCCACAGGCTAAAAAATGGCTACAGGCTAAAATGGCTCCAGTAAATGGAGAAATTTTAGTGGCCACAGTATTTCTTCCTCTTGTTTCCAGTTTGGTTCAACTGACAGCTATTATATCACATCAAATCAGTCTTTGTACCGTGGTATCAAACTTGCCATCTTTACTCTCCCAATTTCCTTCACATCTCTTTGAAGTGGATTATACTCGGGTCCATCCGGTCCCAAGCTGCCAATCTTAACAGTCTGCCGTGCACAGGTTGTGTGGGTCTGAGTATTTCTAAAGTCACCACTGCTGTGGCCTGCTCATTTGTTAGAGCTCATTGAAGAAGTCTGCTGCCTACTTCATTGGAGATGCAAAGGTGACTATGTCCCGTCTCTGTGGCCTGGGAAGTGGTGTGAGACAGAGACAGATCACGCATGTGTGCACACACCCACCTGTGGTAGCGTGTCCCCTGCTTTCCTCATCCCTGACAGCAAAATCTCTTCAGCAGTGAAGGTTTTAGCTGTGGATTGCAGCTCCTCTTCTCTGTTTCGTGTCCACTTTATTTCTAGTCTAGGATCCTTAATAGGCAGAGGCATCTAAAATCAGAGTGAAGCTAAGACTGCCCACCCCTAAATCCGTGTGCGCCCCTGAACTCCTGTTCCCAGCTGCTGCTTAGGCTTCTGCTGTCTCTGCAG
Seq C2 exon
GTGCTGTACCTGGTGGAGAAGGGAGCCGTGATCGAGCATGTGGACCACAGCGGGATGCGGCCCTTGGACAGAGCCATCGGCTGCCGGAACACATCTGTAGTGGTGGCGCTACTCAGAAAGGGAGCCAAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_033394:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(10.0=11.9),PF127962=Ank_2=PU(47.3=74.6)
A:
NA
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)