GgaINT0046919 @ galGal4
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36021618-36024326:+
Coord C1 exon
chr7:36021618-36021793
Coord A exon
chr7:36021794-36024193
Coord C2 exon
chr7:36024194-36024326
Length
2400 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TGCTTTGTTTCTTTTCACAGGTG
3' ss Score
12.02
Exon sequences
Seq C1 exon
GTGCAACTATTTCATCTCTGGACAAAGAAGGGCTGACAGCTTTGGGCTGGGCATGTCTAAAAGGCCACAGAGAAGTGGTTCAGTATTTAGTTGAGAAAGGCGCAACAGTTGATCAGACAGACAAAAATGGACGAACACCTCTAGACCTGGCAGCTTTTTATGGAGATGCTGATATT
Seq A exon
GTAAGTAGTTCTTAAATAGTAAATAGAAAAACAAAACTTGTATTTTTTATAACACAAAACAAAGTTTAAGAAAAAAGTTATCAGCCAAAATAGAAAGGAAATCTGTGTGAGTAACCAAGATGGTTACACCACTGATGTCTTGACTGCAGTTAAGAAGTGTTTGCTCTGAAAAGCATTTTCAAGGTAAGGTTTTAGTACCAAGAAGTCCAGCATTATGCATGTGTGTTTTATAGTGTGCTGCTCTACTTCGTAGTGGGTGTTTTAAATCTCAGTATAAAGGAACATCATAATTTCTGTTTTGGATGAAAGAGAATTAAGAAAGAAAAAAAGTTTGTGGAGTGTAACGTGAAAGAAAAATACATCTTTTTTTTCCTACCTTTGCCAACCAATCAAAGGAACTGGATAGATTCCCAGTCAGCTGGGAACCTGAGTGGAACAGAAGTGCCAAGAGAGGCAGAAGAAGAAGAATATTAACAGAATGGATAAAATTAAGAAAGGTTTTAGTTCTCCACTGTTATACAACGTTACTTATCCATGCTGAGCATTTTACAAGCTCTTGTGTGGCAGTGAAAGAACTGTTAGAAATCCTTACAGTTTTCATCTTAGGAATCTCACAGGGCTGAGTGTATTTCAGTGTTACCATCCAGTCTATAAACTTGTAAACACGAGGCCCGAGATGTAGATTCAGGTTTTCCTTAGTTTATTCCATACATCATTTCAGAGGCAGAACAACAAATGAAGTTCCTATTTCAGTCTTGTATCTTTCTCGTGTACTACCTCCTTTGTCTATAATAAATATTACAATGCAAGAATTAAAGGCATTTTAGGGGAAAGTCCTGATTCTGAAATGCCTGTAACAGAGGTCAGAATTATACAACAGCTTTGAAGCCTGTGACTCAGAATCCTATAAATCTTTAAATTTGTGGTCTTGGAATTTATTGTATATTTTTGTTCTTGTGCTTCAAAACTCAGCAGTAAAGCACGGTTCAGAATTCTGTCCAGATTGGAGTGAAACTGCAGCATGCTACATGGAAGAACATGCTCAGTCTGCATGTGCTGCAAAGAGATCCTACAGCTCACTGGGAGTTAGAATGAATAGCTTTTGCAGCCTCTCAGACCAGTATCTGTTTTCCTACAGTTTGCATGCACAACATCCTGTTTTGAAACAGCAGCTCTTGAAGAAAAGTGCTATGGTATAATTTATTGTGGACTTTAAGACCCATTCTGCTGTAATTAAAATTAACTTGAAATTGTAAGCAAGCCTTTAGACCTTGAACTGGCTTTAAGAGGTTTCAGCAGTCACATCACAGAGCTCTTCCTGCAACTGCAAGTGTTCCTCAGTAACATTGGGTACACAGAGGTTTTTTGTTTCTTTTTTTCCTGATTGGGAATGAGGGATATTGAGTCCTGCATGGCCGTAGCCTGGGCTGTCCTGCTGGAGCAGTAGCACAGCCTGCCAGGGCACCTGATGGATTAGCCACATGGGAAGTTCCCATAGCTGAACAGCCTGATGGTGCGCCGGAGCAGAGATCACACCACAGGCCAGCAGATGTTGGGCTTGGTGGCCTGGGAATGGAAAGGATTGTTAAAAACGTCTCTCCGTGCCATATTACTACCAGTCACGTTTAAGTAAGCAGTGGTTACCTGAAGGAACTGTTGCTTACATCAAAGCCGTTGTTGTTGTTGTTGTAATACCCTATATATTGCACTTTTAATTACTGTTACTGATGAACAAATTAGTGCTTGGAAGCTGATGATATCTCACATTTGTTTTCCTAAACTTATTTGCTCTTGTTGCATTTCACATTTGCTGCATTTATATTTCAAACAATGGTGTTAGATTGCTGGAATAGATGGTTAAGAAATTAATAAAATAATTGTCTGAGGCATTTTTCACTTTGCGTTGAACAAGAAGCAGTTCTTCAGCATCATAACTTTTGTTTGAATTGCTAACTGGAATGCTGTAAAGTATCTGAGACAAAAATATTCTATTTTCCTTGTACTGTATTTGTACAACTTTTTGTCCTGTACTGGGCGCTGTTCAGGTACTGTGCCCGATGCCTCACGGAGTGCTTGCAGCCCCTGGTAATCAGCTGAAAGCACGCGTCCTGCACTGCCGCTCTGTTTGTCCTTCTGGTACAGCTGCTTCCAGGAATTTGGATCTTGTGGTTTGTCTGTCTCTAATTGGGACAGTGCAGCTCTTAGGCACAGTTTGATAGCGTTCCCATGCTCTGCTGTATTGCATGGGCTCTGTTCAGTGGATTTAAAATGATGTAAACATACTCTGGAGGGTATACTCAATATGCTTCAAGGAAGATTAGGCAGTAGTTTGCATGTTTCACAGTTCTGCATCTCTGACCAAGAATAACATTACAAAGCTTGCTTTGTTTCTTTTCACAG
Seq C2 exon
GTGCAGTATTTGGTAGAAAAAGGAGCAATGATTGAGCATGTTGACCACAGCGGCATGCGGCCACTGGACAGAGCCATTGGATGTCGTAATACATCAGTGGTGGTTATGCTCCTGAGGAAAGGAGCTAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
NA
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]