RnoINT0147522 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45907322-45909150:+
Coord C1 exon
chr3:45907322-45907497
Coord A exon
chr3:45907498-45909017
Coord C2 exon
chr3:45909018-45909150
Length
1520 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TGCTCCTGCTGCTGCTGTAGGTG
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAATAGACCAAACAGACAAAAATGGCCGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAGACT
Seq A exon
GTGAGTACTAATGGACATTCACTTCTGGTGTGTGTACCTGCTCCTGTGTGTGTCCTTGTTCCTGTGTGTGCACTTCTAGTGTGTGTATTTGCTCCTGTGTCCATTATGTGTCAGCATGGAAATTGGTTCATTGTACCGTGCAAAGCTGTGTCTGACATGGACTGTGTGTGTATATACACGTGCCCACATGGTATATGGGATCTTTTCACTTGTCTATAGTTCTGTTATGTGCAGTTCAATCCAAGTCTATTAGTCAAGATTTTAATGCACTTAAAGATGCATTTATCTATTATGTATATAATGTTATGCCTGCATGTGTACACATTCCTGTGTGCCAGAAGAGGGCACCAGATCTCATTATAGATGGTTATGAACCACTATATGAGTGCTAGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTAAGCCATTTCTCCAGCCTTCATGCATGCTTAAAAGCCTAAAAGTGCTAAACCTACATATATGACAGACATGGAGGGGAACATGTTTACCCTATTCATAGTAATATCATGTACTGCATATAAATAAAATACCTCCATAGATCATTCAGAAGCCACTTTCACTTAAGAAAAAAGCATTAATTAGCCAAATAGTTAAATCATAATATATTAATTGTTTAAAATTATTTTTAGTTATGATTTCAATTCATAAACTAAGAACTGGGAGCTGATTTTCAGGGCACATACCATGCCTGCATCAGGCTGCACATCCCTGACCTCTGCAGTCACCAGCATTAGGGAGCTGCTAAGACTCAGCTCTTATAGTCCCGTGGTCTGATAAGAGGGTGACCTAGAGAGATACATGTTGTGCTATGGAAAGGCAGTGACCTGAGGCTTTAGTTGTCCATCCATCAGAAGAAATACCACTGGACAGACATCTCTGAAAAGACCCCATTCAACCTTTTGGGCTGTGGCTATATGCTCAGAAATGCACTGGCCGATCATATATATGGTAGTCCTTTAGGCCTCACACAGCCCAGGCTGGCCTCAAGCTGTCTACTGTAGCCAAGGTTGGCCTTCACTCCTGATCTTCCTGCCTCCACCTGCCACACATTCTGATGGCAGGTGTGTACCACTGTCCTTGCCAGTTTTTCTGCTTTTAACTTCCTAAGGACACCCCACCAGCACACAACCTCAGGCTGTGTGAATCTGTGTGTCTGGAGAAGCCATTGCTAATTGCACATGAACAGGCAGGGCAGGCGGATCCTGCACCTTGGCACACACATGTCTGCCCGTGGGCTTCTTCCTCATCACTACCATTGTCACTGACATCGCCAACTGTTGACAGCAGAGAGATTTTCACCATCATAGTGCCCTCTCTTGGGTGCCACATTAGTTTTATTTCCAACCCCCATGACCAGAGCCATCTCAAGTAGGTATCAGCTCAGACTGGCACCCCCACTGTCAGAAGGCAGAACTGGGTAGGGGTCTGCCCCTTCCAGGGACTGCTGCTCAGGTTTCTGCTGCTCCTGCTGCTGCTGTAG
Seq C2 exon
GTGCTGTACCTGGTGGAGAAAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGTTGCCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
NA
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTCTTTCTTCCCTGG
R:
GGCTCCTTTTCTCAGCAGTGT
Band lengths:
302-1822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]