MmuINT0156845 @ mm10
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59835392-59837218:+
Coord C1 exon
chr2:59835392-59835567
Coord A exon
chr2:59835568-59837085
Coord C2 exon
chr2:59837086-59837218
Length
1518 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TGCTGGCCCTGCTGCTGTAGGTG
3' ss Score
7.38
Exon sequences
Seq C1 exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCAGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTACCTGGTCGAAGAAGGAGCAGAGATAGACCAGACAGACAAAAACGGCCGTACTCCCTTGGACCTGGCCGCTTTCTATGGTGATGCAGAGACT
Seq A exon
GTGAGTACTGATGGATGTTCGCTTCTGGTGTGTGCACTTCCTCCTGTGTGCAGGATGGGTCAGCATGGAAGTTGGTTCATAGCGCCCTGCAAAGTTGTGTCTGACATGGACTGTGTGTGTGTATATACTCTTGCCCACATGGTATATGGGATCTTTTCAATTATCTATAATTCTGTAGGTGCAGTTCAGTCCAAGACTATTAGTCAAGATTTTAATGTGCTCTTTTTTAAAGACGTAGTTATTTATTATGTATACAACGTTCTGCCTGCATGTGTGCATATGCCTGCGTGCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTTTGATTCACCATATGGGTAGTAGGAATTGAACTCAGGACCTCTAAAAGAGCAGCCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCTTCATGTACTCTTAAAAGCCTAAAAGTACTACCCTACATATACTGCAGACATGGAAGGAGGCATGTTTGCCCTGTTCGTGGTCTTATCTTATCATGAGCTGCATATAAATAAAATTCCTCCATAGGTCATTCAGAAACCACTTTCACCTAAGAAAATGCATTATTTAAGCAAAAAGATAGATTATAATATACTAATTGTTTTAAATTATTTTTAGTTATGATTTTAATTGATAAATTAGGATTTTCAGGGCAGACACCATGCCTTTATCAGGCTGCACATCCCAGACCTGAGTGACCGGCATTGTAGAGCTACTAGGGACTCTGCTTTTATAGTGGCATGTGTCTTGACAAGAGGATGGCCCGGAGAGACACATGCTGTGTCGTGGAAAGGCAGTGACCTGGGCTGGGGCTTTATTTGTCTGTCCATCCATCAGTAGAAATACCACTGGACAAATAAATATCTCTTAAAAGATACCACTCAATCTTTTTCGCTATGAAAATGCTCAGAAATGCACTTGCCAGATCATATGGTAATCCTTTGGGTTTTTAAAAATAAGGTCTCACATAGCCCAGGCTGTAGAGACTGTAGCCAAGGTTGGCCTTGCTCTCCTAATCTTCCTGCCTCCACCTCCCAAATACTCTGATGGCAGGCAGGTGTATACCACGGTCCTTGGCTGTTGTTCTGTTTTTAACTTCCTAAGGACACCCCACCAGCACACAACCTCAGACTGTGTGGATCTGTGTGTCTGGAACAAGCCAGAGCTCATGGTAGAAGCCATTGCTAACTGCAGGTGAACAGGCGGAAGAGGCACAGATCGTGCACCTCAGCATACACCTGTCTGCCTGTGGGCGTCTTCATCACCGACATTTGCCACTGACATCACTGACTGATGACAGCAGAGAGATGTTCGCCATTGTAGTGCCTTTCTTTTGGTGTCACATTGGTTTTATTTCCACATGTCCCCAAACCCCCCACCATGACCAGAGCTATCTCAAGTGGGTATAAAGCTAATACCGGTACCCCACAGTCAGAAGACAGAACTGGACAGGTGCCTGCTCCTGCCAGGGACTGCTTCTCAGGTTTCTGCTGGCCCTGCTGCTGTAG
Seq C2 exon
GTGCTGTATCTGGTGGAGAAGGGAGCCGTGATAGAACATGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGCTGTCGAAACACTGCTGTAGTGGTTACCCTGCTTAGAAAAGGAGCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168:ENSMUST00000112568:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(10.1=11.9),PF127962=Ank_2=PU(47.3=74.6)
A:
NA
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTCTTTCTTCCCTGG
R:
TGGCTCCTTTTCTAAGCAGGG
Band lengths:
303-1821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types